Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001928-TA|BGIBMGA001928-PA|IPR002078|Sigma-54 factor,
interaction region, IPR003577|Ras small GTPase, Ras type,
IPR003579|Ras small GTPase, Rab type, IPR003578|Ras small GTPase, Rho
type, IPR002041|GTP-binding nuclear protein Ran, IPR001806|Ras GTPase,
IPR005225|Small GTP-binding protein domain, IPR013753|Ras
(214 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 208 6e-55
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 199 2e-52
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 187 1e-48
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 173 1e-44
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 143 2e-35
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 142 3e-35
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 130 2e-31
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 120 2e-28
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 109 2e-25
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 87 1e-18
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 85 6e-18
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 79 6e-16
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 77 3e-15
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 76 3e-15
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 75 1e-14
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 64 2e-11
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 63 3e-11
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 60 3e-10
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 43 3e-05
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 43 4e-05
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 43 4e-05
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 37 0.002
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 30 0.22
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 29 0.52
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 3.6
SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces... 26 4.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 6.4
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 25 8.4
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ... 25 8.4
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 25 8.4
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 25 8.4
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma... 25 8.4
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 25 8.4
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 208 bits (507), Expect = 6e-55
Identities = 94/187 (50%), Positives = 136/187 (72%)
Query: 2 AYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWD 61
+Y YL K ++IGD+GVGKSCLLL+F++ F P TIG++F R I +DGK+IKLQIWD
Sbjct: 5 SYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWD 64
Query: 62 TAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKS 121
TAGQE FR+IT +YYRGA G LL+YD+T +++F+++ TW + QH++ N+ +LIGNK
Sbjct: 65 TAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKC 124
Query: 122 DLESRREVKKEEGEAFAREHGLVFMETSAKTAANVEEAFINTAKEIYEKIQEGVFDINNE 181
D E +R+V E+G+A A E G+ F+E SAKT NV+EAF A+EI ++ + + +N+
Sbjct: 125 DCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQ 184
Query: 182 ANGIKIG 188
AN + +G
Sbjct: 185 ANNVDLG 191
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 199 bits (486), Expect = 2e-52
Identities = 94/166 (56%), Positives = 124/166 (74%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62
Y YLFK ++IGD+GVGKS LL++FT F TIGVEF R I +D K+IK QIWDT
Sbjct: 7 YDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDT 66
Query: 63 AGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122
AGQE +R+IT +YYRGA GAL+VYDIT++ +F+++ WL++ R+H++SN+VIML+GNK+D
Sbjct: 67 AGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTD 126
Query: 123 LESRREVKKEEGEAFAREHGLVFMETSAKTAANVEEAFINTAKEIY 168
L R V EE +AFA E+ L F+ETSA A+NVEEAF EI+
Sbjct: 127 LLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIF 172
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 187 bits (455), Expect = 1e-48
Identities = 83/186 (44%), Positives = 129/186 (69%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62
Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R ++GK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDT 64
Query: 63 AGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122
AGQE FR+IT SYYRGA G ++VYD+T +++FN++ WL++ +++ + +L+GNKSD
Sbjct: 65 AGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSD 124
Query: 123 LESRREVKKEEGEAFAREHGLVFMETSAKTAANVEEAFINTAKEIYEKIQEGVFDINNEA 182
+ ++ V+ + FA + F+ETSAK + NVE+AF+ +++I E++ F +N
Sbjct: 125 MVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAK 184
Query: 183 NGIKIG 188
+ +K+G
Sbjct: 185 SSVKVG 190
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 173 bits (422), Expect = 1e-44
Identities = 84/192 (43%), Positives = 127/192 (66%), Gaps = 5/192 (2%)
Query: 2 AYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI----DGKQIKL 57
+Y YL K ++ G +G GKSCLL +F ++ T+G++F +R+I++ K+IKL
Sbjct: 5 SYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKL 64
Query: 58 QIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLI 117
QIWDTAGQE FRS+ R+YYRGAAGA+LVYD+T +++F L++WL D R + S + ++L
Sbjct: 65 QIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLA 124
Query: 118 GNKSDLESRREVKKEEGEAFARE-HGLVFMETSAKTAANVEEAFINTAKEIYEKIQEGVF 176
G+KSDL+++R+V EE F E H ETS+ T +NVEE F++ I +I+ G
Sbjct: 125 GSKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFLSVVSTIITRIELGEI 184
Query: 177 DINNEANGIKIG 188
D +++ GI+ G
Sbjct: 185 DPQDQSLGIQYG 196
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 143 bits (346), Expect = 2e-35
Identities = 64/159 (40%), Positives = 105/159 (66%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 66
FK + +G+ VGK+ L+ +F +F + TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 71
Query: 67 AFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 126
FRS+ SY R ++ A++VYDIT +F + W+ED R +++I+L+GNK+DL +
Sbjct: 72 RFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADK 131
Query: 127 REVKKEEGEAFAREHGLVFMETSAKTAANVEEAFINTAK 165
R+V +EEGE A+E ++ METSAK NV+ F A+
Sbjct: 132 RQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQ 170
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 142 bits (344), Expect = 3e-35
Identities = 73/180 (40%), Positives = 111/180 (61%), Gaps = 4/180 (2%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-GKQIKLQIWDTAGQE 66
K +++GD+ VGKS L+L+F +F + TIG F + + ID +KL+IWDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 67 AFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ES 125
++S+ YYR A A++VYDIT+ + +W+++ ++ + +VI L GNK DL +
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQE 135
Query: 126 RREVKKEEGEAFAREHGLVFMETSAKTAANVEEAFINTAKE--IYEKIQEGVFDINNEAN 183
RR V+K + EA+A E L+F ETSAKTA NV E F AK+ + +K+ + +N N
Sbjct: 136 RRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLPLEDKLNQARGAVNRGVN 195
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 130 bits (313), Expect = 2e-31
Identities = 69/173 (39%), Positives = 108/173 (62%), Gaps = 6/173 (3%)
Query: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 64
+L K II+G++GVGK+ ++ Q+ +++F + TIG +F + + +D K + LQ+WDTAG
Sbjct: 7 HLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAG 66
Query: 65 QEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-ARQHSNSN---MVIMLIGNK 120
QE F+S+ ++YRGA +LVYD+ ++F L +W ++ Q S SN +L+GNK
Sbjct: 67 QERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNK 126
Query: 121 SDL-ESRREVKKEEGEAFAREHG-LVFMETSAKTAANVEEAFINTAKEIYEKI 171
D+ E +R V K + AF + G + + ETSAK A NV+EAF AK E +
Sbjct: 127 VDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALENM 179
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 120 bits (288), Expect = 2e-28
Identities = 68/183 (37%), Positives = 101/183 (55%), Gaps = 5/183 (2%)
Query: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62
Y +K +++GD GVGKS L +Q F +D TI + + IDG+ L + DT
Sbjct: 5 YLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSY-RKKCEIDGEGALLDVLDT 63
Query: 63 AGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA-RQHSNSNMVIMLIGNKS 121
AGQE + ++ Y R G LLVY+IT R +F+ ++T+ + R ++L+ NK
Sbjct: 64 AGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKC 123
Query: 122 DLESRREVKKEEGEAFAREHGLVFMETSAKTAANVEEAFINTAKEI--YEKIQEGVFDIN 179
DLE+ R V + EGE A+ +++ETSAK NVEEAF + + I Y K +E F N
Sbjct: 124 DLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRRYNKSEEKGFQ-N 182
Query: 180 NEA 182
+A
Sbjct: 183 KQA 185
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 109 bits (263), Expect = 2e-25
Identities = 53/160 (33%), Positives = 97/160 (60%), Gaps = 7/160 (4%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQEA 67
K +I+GD+GVGK+CL+ QF +++F + TIG +F + + +D K + LQ+WDTAGQE
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN---MVIMLIGNKSDLE 124
F+S+ ++YRGA ++VY++ ++F+ + W ++ ++ + +++GN+ D +
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKD 129
Query: 125 -SRREVKKEEGEAFAR-EHG--LVFMETSAKTAANVEEAF 160
S+R V + + +HG ++ E SAK NV + F
Sbjct: 130 ASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLF 169
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 87.4 bits (207), Expect = 1e-18
Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQEAFRS 70
++G VGKS L +Q+ + F + TI F ++ I G++ +I DTAGQ+ +
Sbjct: 11 VLGSRSVGKSSLTVQYVENHFVESYYPTIENTF-SKNIKYKGQEFATEIIDTAGQDEYSI 69
Query: 71 ITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV-IMLIGNKSDLESRREV 129
+ + G G +LVY IT + +F + + H+ + V I+++GNKSDL +R V
Sbjct: 70 LNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQRAV 129
Query: 130 KKEEGEAFAREHGLVFMETSAKTAANVEEAFINTAKEI 167
EEG+A A E + E SA+ NV AF EI
Sbjct: 130 TAEEGKALANEWKCAWTEASARHNENVARAFELIISEI 167
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 85.4 bits (202), Expect = 6e-18
Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + +I +WDTAGQE
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
Query: 67 AFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 126
+ YY ++++D+T R T+ ++ W D + N+ I+L GNK D++ R
Sbjct: 70 KLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVC-ENIPIVLCGNKVDVKER 128
Query: 127 REVKKEEGEAFAREHGLVFMETSAKTAANVEEAFINTAKEI 167
+ K + F R+ L + + SAK+ N E+ F+ A+++
Sbjct: 129 K--VKAKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 78.6 bits (185), Expect = 6e-16
Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 16/172 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQEA 67
K +I+GD GK+CLL+ F+ F V+ T+ + A + +DG+ I+L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHIELALWDTAGQED 66
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQHSNSNMVIMLIGNKSDLE-- 124
+ + Y + L+ + + E+ +++ W+ + H SN+ I+L+G K DL
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEV-LHFCSNLPILLVGCKVDLRND 125
Query: 125 ----------SRREVKKEEGEAFAREHGLV-FMETSAKTAANVEEAFINTAK 165
S++ + EEG+ A++ G ++E SAK V E F A+
Sbjct: 126 PKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAAR 177
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 76.6 bits (180), Expect = 3e-15
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 12/187 (6%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQEA 67
K +I+GD GK+ LL FT F V++ TI + I +DG I+L +WDTAGQE
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENY-IHDIFVDGNSIELSLWDTAGQEE 73
Query: 68 FRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 126
+ + Y ++ + + R++ N +T WL + + + ++L+ K DL
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNC-PGVKLVLVALKCDLRGA 132
Query: 127 RE--------VKKEEGEAFAREHGLV-FMETSAKTAANVEEAFINTAKEIYEKIQEGVFD 177
E + EEG A A++ V ++E SAK V EAF A+ G D
Sbjct: 133 DEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEAARVALAAQPRGTKD 192
Query: 178 INNEANG 184
+E++G
Sbjct: 193 GADESHG 199
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 76.2 bits (179), Expect = 3e-15
Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Query: 11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQEAFRS 70
+IGD+ +GK+ L++ + F T+GV F + I+I +I IWD GQ F +
Sbjct: 15 MIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVN 74
Query: 71 ITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSD------LE 124
+ A L ++D++R+ T N + W AR N V +LIG K D E
Sbjct: 75 MLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGF-NKTAVPILIGTKYDHFMTFPRE 133
Query: 125 SRREVKKEEGE-AFAREHGLVFMETSAKTAANVEEAFINTAKEIYE 169
+ E+ K+ A A + LVF TS + NV++ F ++++
Sbjct: 134 DQEEITKQARRYAKAMKASLVFCSTS--HSINVQKIFKIVLAKVFD 177
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 74.5 bits (175), Expect = 1e-14
Identities = 49/167 (29%), Positives = 88/167 (52%), Gaps = 16/167 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQEA 67
K +I+GD GK+CLL+ F+ F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHVELALWDTAGQED 66
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQHSNSNMVIMLIGNKSDLE-- 124
+ + Y + L+ + + ++ +++ W+ + H S++ I+L+ K+DL
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEV-LHFCSSLPILLVACKADLRND 125
Query: 125 ----------SRREVKKEEGEAFAREHGLV-FMETSAKTAANVEEAF 160
++ V EEG+A A++ G ++E SAKT V E F
Sbjct: 126 PKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVF 172
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 63.7 bits (148), Expect = 2e-11
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQEA 67
K +++GD GK+ LL FT F + T+ + + +DGK ++L +WDTAGQE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDC-RVDGKSVQLALWDTAGQEE 68
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLTT-WLEDARQHSNSNMVIMLIGNKSDL--- 123
+ + Y A L+ + I ++ +++T W+E+ N+ +L+G K+DL
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLC-PNVPFILVGMKADLRSD 127
Query: 124 -----ESRRE----VKKEEGEAFAREHGL-VFMETSAKTAANVEEAF 160
E RR VK ++ E A+ G +ME S+ T V++ F
Sbjct: 128 PVAIEEMRRRNQNFVKSQQAELVAQRIGARKYMECSSLTGDGVDDVF 174
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 62.9 bits (146), Expect = 3e-11
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI--DGKQIKLQIWDTAGQ 65
K +++GD G GK+CLL+ F+ F + T+ + IT + K I+L +WDTAGQ
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENY-ITDITYGPNSKVIELALWDTAGQ 74
Query: 66 EAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHSNSNMVIMLIGNKSDLE 124
E + + Y + LL + I + N++T W + QH I+L+G K+DL
Sbjct: 75 EEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEV-QHFCPRTPIVLVGLKADLR 133
Query: 125 SRR---EVKKEEG---------EAFAREHGLVFMETSAKTAANVEEAF 160
R EV + +G ++ A ++E SAK V E F
Sbjct: 134 KDRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEVF 181
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 59.7 bits (138), Expect = 3e-10
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQEA 67
K +++GD VGK+CLL+ +T +F + T+ + A + I + L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNY-AVTVMIGDEPYTLGLFDTAGQED 63
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQHSNSNMVIMLIGNKSDLESR 126
+ + Y L+ + +T +F ++ W + H + +++G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHC-PGVPCLIVGTQIDLRDD 122
Query: 127 REVKK------------EEGEAFAREHGLV-FMETSAKTAANVEEAF 160
V++ E+GE ARE G V ++E SA T ++ F
Sbjct: 123 PSVQQKLARQHQHPLTHEQGERLARELGAVKYVECSALTQKGLKNVF 169
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 43.2 bits (97), Expect = 3e-05
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 43 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVY----DITRRETFNHLT 98
FG ++ T++ + ++ IWD GQ+ R+ ++Y+ + V D+ E N L
Sbjct: 48 FGFQIRTLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQ 107
Query: 99 TWLEDARQHSNSNMVIMLIGNKSDLE---SRREVKKEEG-EAFAREHGLVFMETSAKTAA 154
L + + S I+++ NKSD+ S E+ K + H +F SA T
Sbjct: 108 ELLVEEKLLFTS---ILVLANKSDVSGALSSEEISKILNISKYKSSHWRIF-SVSALTGL 163
Query: 155 NVEEAFINTAKEIYEKIQEGVFD 177
N+++A A ++ E I+ G D
Sbjct: 164 NIKDAISWLANDLKE-IKLGTID 185
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 42.7 bits (96), Expect = 4e-05
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 44 GARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED 103
G + T++ + I +WD GQ+ R + R Y++ G + V D RE + L+
Sbjct: 50 GFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQR 109
Query: 104 ARQHSNSNMVIMLI-GNKSDL 123
++L+ NK DL
Sbjct: 110 MLNEDELRDALLLVFANKQDL 130
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 42.7 bits (96), Expect = 4e-05
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQEA 67
+ +++G GK+ +L + K Q V +TI G + T+ K IK +WD GQ+
Sbjct: 23 RILMLGLDAAGKTTILYKL--KLNQSV--VTIPT-VGFNVETVTYKNIKFNVWDVGGQDK 77
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-ARQHSNSNMVIMLIGNKSDL 123
R + R Y+ G G + V D + L + +++++ NK DL
Sbjct: 78 IRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDL 134
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 37.1 bits (82), Expect = 0.002
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 8 KYIIIGDTGVGKSCLL-LQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 66
K +++G +G GKS + + F++ + L ++ + G + L +WD GQE
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQE 62
Query: 67 AFR----SITRSY-YRGAAGALLVYDITRRETFNHLTTW---LEDARQHSNSNMVIMLIG 118
AF S R + +R + V+D+ RE L T+ LE +S V LI
Sbjct: 63 AFMENYLSAQRDHIFRNVQVLIYVFDVESREFERDLVTFRNCLEATVANSPQARVFCLI- 121
Query: 119 NKSDL--ESRREVKKEEGEAFARE 140
+K DL E R++ EE +A E
Sbjct: 122 HKMDLVQEDLRDLVFEERKAILLE 145
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 30.3 bits (65), Expect = 0.22
Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 21/184 (11%)
Query: 14 DTGVGKSCLLL--QFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT------AGQ 65
D + LLL Q D+ + V +LT+ + G ++ + K ++WD+ Q
Sbjct: 440 DISMQNEALLLRKQENDRLVKQVEELTVALNSGKMNAIVEAESSKNELWDSMMVSRMKTQ 499
Query: 66 EAFRSITRSYYR------GAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGN 119
E +TR Y + L+ + RE + L ++E+ Q ++ +
Sbjct: 500 EQSIELTRLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKEVLSKSS 559
Query: 120 KSDLESRREVKKEEGEAFAREHGLVFMETSAKTAANVEEAFINTAKEIYEKIQEGVFDIN 179
K + V K EA RE +E KT EE+ I+ KE EK+ + + ++
Sbjct: 560 KESDDYEEVVGKLRTEA-ERE-----IEKFEKTIRENEES-ISLFKEEVEKLTDEITQLS 612
Query: 180 NEAN 183
N
Sbjct: 613 ERYN 616
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 29.1 bits (62), Expect = 0.52
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 120 KSDLESRREVKKEEGEAFAREHGLVFMETSAKTAANVEEAFINTAKEIYEKIQEGVFDI 178
K++ E RR + E A+ ++ + AA VEE IN+ EI EK+ E D+
Sbjct: 216 KAEREKRRLQNERNRERNAQRVSASKLDLAILEAAEVEE--INSTTEIEEKVDEASLDL 272
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 106 QHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLVFMETSAK 151
QH N ++V L+G+K L SR + +E +++M + K
Sbjct: 738 QHVNRDLVRNLLGSKGLLRSRCVILSTNSLTVLKEASMIYMLRNGK 783
>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 108
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/81 (17%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 101 LEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLVFMETSAKTAANVEEAF 160
+E ARQH + + K +++ K+EE + + ++ + A++ V++ F
Sbjct: 23 VEKARQHRTQRLKDARLEAKREIDEYASKKEEEFKKSESQASGIYSQAEAESKKQVQDTF 82
Query: 161 IN---TAKEIYEKIQEGVFDI 178
+ ++++ +K+ + + I
Sbjct: 83 ASIETSSQKNSDKVVDAILSI 103
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 10 IIIGDTGVGKSCLL 23
I++GDT GK+C+L
Sbjct: 1873 ILVGDTATGKTCIL 1886
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 10 IIIGDTGVGKSCLLLQFTDKRF 31
++IG TG GKS L +Q KRF
Sbjct: 7 VVIGTTGAGKSDLAVQLA-KRF 27
>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 25.0 bits (52), Expect = 8.4
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 134 GEAFARE---HGLVFMETSAKTAANVEEAFINTAKEIYEKIQEGVFDINNEANGIK 186
G A A E G + ++ K++A E I T+K I GVF+ +N A G K
Sbjct: 296 GSATAEEGIPDGWMGLDCGPKSSAKFAEV-ITTSKTIVWNGPAGVFEFDNFAKGTK 350
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 65 QEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 124
+E R + YR A G + + R+E L E+AR+ ++ + + E
Sbjct: 146 EEELRKSRETVYRDATGRRIDLVLARKEAKRKLKEKEEEARRQKEQQQGVVQV--RQQKE 203
Query: 125 SRREVKKEEGEAFAR 139
+E+++++ AR
Sbjct: 204 YLKELERQKTVPLAR 218
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 95 NHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEE 133
++ TWL ++ N+N+ + + S L+ + ++KK E
Sbjct: 386 DNTVTWLATWHENINNNVKYVFLAAGSSLKGQSDLKKYE 424
>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 148 TSAKTAANVEEAFINTAKEIYEKIQEGVFDINNEANG 184
T K + E + A I K+ E + ++NNE+NG
Sbjct: 38 TPTKVIDDQREILLQKASRI-SKLDEALCELNNESNG 73
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 8.4
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 56 KLQIWDTAG---QEAFRSITRSYYRGAAG--ALLVY-DITRRETFNHL 97
K +W +G Q S T+ ++ G AG A L Y DI T+NHL
Sbjct: 226 KQDLWLLSGFALQHRTLSSTKGWFNGFAGSSATLTYLDIVPARTWNHL 273
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.135 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 811,489
Number of Sequences: 5004
Number of extensions: 30021
Number of successful extensions: 159
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 36
length of query: 214
length of database: 2,362,478
effective HSP length: 70
effective length of query: 144
effective length of database: 2,012,198
effective search space: 289756512
effective search space used: 289756512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)
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