GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001928-TA|BGIBMGA001928-PA|IPR002078|Sigma-54 factor,
interaction region, IPR003577|Ras small GTPase, Ras type,
IPR003579|Ras small GTPase, Rab type, IPR003578|Ras small GTPase, Rho
type, IPR002041|GTP-binding nuclear protein Ran, IPR001806|Ras GTPase,
IPR005225|Small GTP-binding protein domain, IPR013753|Ras
         (214 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.           152   9e-39
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    78   2e-16
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    25   2.3  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    23   5.2  
X95912-1|CAA65156.1|  696|Anopheles gambiae immune factor protein.     23   9.2  
CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative dodecenoy...    23   9.2  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score =  152 bits (368), Expect = 9e-39
 Identities = 69/161 (42%), Positives = 107/161 (66%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + + ID   +K +IWDTAGQE
Sbjct: 25  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQE 84

Query: 67  AFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 126
            + S+   YYRGA  A++VYDI   ++F    TW+++ ++ ++ N+VI L GNK+DL + 
Sbjct: 85  RYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQASPNIVIALAGNKADLANS 144

Query: 127 REVKKEEGEAFAREHGLVFMETSAKTAANVEEAFINTAKEI 167
           R V  EE + +A ++ L+FMETSAKTA NV + F+  AK++
Sbjct: 145 RVVDYEEAKQYADDNRLLFMETSAKTAVNVNDIFLAIAKKL 185


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 77.8 bits (183), Expect = 2e-16
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 16/167 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQEA 67
           K +++GD  VGK+C+L+ +T   F   +  T    + A M+ +DG Q+ L +WDTAGQE 
Sbjct: 8   KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTSFDNYSAPMV-VDGVQVSLGLWDTAGQED 66

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLTT-WLEDARQHSNSNMVIMLIGNKSDLESR 126
           +  +    Y      L+ Y +    +F ++T+ W  + + H   +  I+L+G K DL   
Sbjct: 67  YDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKHHC-PDAPIILVGTKIDLRED 125

Query: 127 RE------------VKKEEGEAFARE-HGLVFMETSAKTAANVEEAF 160
           RE            +K+E+G+  A +   + +ME SA T   +++ F
Sbjct: 126 RETISLLADQGLSALKREQGQKLANKIRAVKYMECSALTQRGLKQVF 172


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 16  GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQEAFRSIT 72
           G+ KS   +  T   + P  D    ++FG+   T DG Q+ LQ+ D AG +    +T
Sbjct: 157 GIFKSTCKIDIT---WFPFDDQRCEMKFGSW--TYDGFQLDLQLQDEAGGDVSSFVT 208


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 16  GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQEAFRSIT 72
           G+ KS   +  T   + P  D    ++FG+   T DG Q+ LQ+ D +G +    IT
Sbjct: 125 GIFKSTCKIDIT---WFPFDDQRCEMKFGSW--TYDGFQLDLQLQDESGGDISSFIT 176


>X95912-1|CAA65156.1|  696|Anopheles gambiae immune factor protein.
          Length = 696

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 74  SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 111
           S  R   G+L   D+ R E   ++ T   + +QHS SN
Sbjct: 601 SELRSVLGSLSTTDLNRLEQTANMQTSGGNYQQHSASN 638


>CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative
           dodecenoylCoA deltaisomerase protein.
          Length = 324

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 145 FMETSAKTAANVEEAFINTAKEIYEKIQEGV 175
           F +   + AANV    +  AKE  +K ++G+
Sbjct: 266 FEQALEREAANVTVELLQEAKEGADKFRQGI 296


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,015
Number of Sequences: 2123
Number of extensions: 6401
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 214
length of database: 516,269
effective HSP length: 61
effective length of query: 153
effective length of database: 386,766
effective search space: 59175198
effective search space used: 59175198
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)