Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001927-TA|BGIBMGA001927-PA|IPR000092|Polyprenyl
synthetase, IPR008949|Terpenoid synthase
(592 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44) 132 1e-30
SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.28
SB_35377| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 33 0.49
SB_13004| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34) 33 0.49
SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 33 0.49
SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.49
SB_11999| Best HMM Match : B5 (HMM E-Value=7) 33 0.65
SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.86
SB_6325| Best HMM Match : DUF1472 (HMM E-Value=2.5) 31 2.0
SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.0
SB_7912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.0
>SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)
Length = 303
Score = 132 bits (318), Expect = 1e-30
Identities = 58/147 (39%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Query: 257 FQDAWKGIIDNLTTNKKFT-QLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPEN 315
F DA+ G +++L ++ + + W+++VLEYNV GGK+ RG++ + + + E+
Sbjct: 21 FDDAFPGFVNDLVQEEENDLAIGDSIKWLREVLEYNVPGGKRNRGLSVIGSLRHLIREEH 80
Query: 316 VTEEMVRLARVAGWCTEMLQAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVY 375
T+E +R+A + GWC E QA+ ++ DDIMD S TRRG PCWYR P+VG AIND I++
Sbjct: 81 FTDEHLRVALLLGWCVEWFQAFFLVADDIMDQSMTRRGQPCWYRQPEVGNIAINDGIMIE 140
Query: 376 GSIYEILKIYFGKAKEYADILDIFNEA 402
+++ +LK + Y D++++F+EA
Sbjct: 141 QTVFRLLKKHIKHQSYYVDVVELFHEA 167
Score = 109 bits (263), Expect = 5e-24
Identities = 52/106 (49%), Positives = 70/106 (66%)
Query: 104 DEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTE 163
DE + +A+ I LE+G FQIQDD+ID FGD TGKVGTDI+E KCTWL VQAL+R
Sbjct: 171 DEASHANAKIILLEMGEFFQIQDDYIDVFGDASVTGKVGTDIEEGKCTWLVVQALKRANA 230
Query: 164 AQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNII 209
Q T+ K G ++ ++KR+Y +L+L Q++ E+A Y II
Sbjct: 231 QQLTIIKENLGINDIEASAKVKRVYRELNLEQVFHEYEEASYQRII 276
Score = 107 bits (256), Expect = 3e-23
Identities = 49/121 (40%), Positives = 74/121 (61%)
Query: 470 ICFEIGKLFQIQDDFMDCFGNETVTGKKGTDIQEGKCSWLAVNALQRCNDAQRTLFAQNY 529
I E+G+ FQIQDD++D FG+ +VTGK GTDI+EGKC+WL V AL+R N Q T+ +N
Sbjct: 181 ILLEMGEFFQIQDDYIDVFGDASVTGKVGTDIEEGKCTWLVVQALKRANAQQLTIIKENL 240
Query: 530 ASKDPDDVASIKRLYEDLQLPKLYKEQEDEIHSGILKKINALPSSTSPAIFFKLLDMIFK 589
D + A +KR+Y +L L +++ E E+ + I+ I+ +F + I+K
Sbjct: 241 GINDIEASAKVKRVYRELNLEQVFHEYEEASYQRIIDLISKHSGDLPDEVFLDFVRKIYK 300
Query: 590 R 590
R
Sbjct: 301 R 301
>SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 34.3 bits (75), Expect = 0.28
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 268 LTTNKKFTQLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVA 327
+T + FT+L EL S + K GK +R + ++A ++ EKPE++ EE++ +
Sbjct: 29 ITKDGGFTEL-ELASAKNTTQQLEAKAGK-LRDLDEIIAPKI-EKPEDLEEEIMETEEIQ 85
Query: 328 GWCTEML-QAYLIMNDDIMDGSST 350
T+M+ + +I+N+D + +T
Sbjct: 86 EGITDMIAKLSVIINNDNVPSVNT 109
>SB_35377| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1400
Score = 33.5 bits (73), Expect = 0.49
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 269 TTNKKFTQLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAG 328
T + FT+L EL S + K GK +R + ++A ++ EKPE++ EE++ +
Sbjct: 30 TKDGGFTEL-ELASAKNTTQQLEAKAGK-LRDLDEIIAPKI-EKPEDLEEEIMETEEIQE 86
Query: 329 WCTEML-QAYLIMNDDIMDGSST 350
T+M+ + +I+N+D + +T
Sbjct: 87 GITDMIAKLSVIINNDNVPSVNT 109
>SB_13004| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)
Length = 636
Score = 33.5 bits (73), Expect = 0.49
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 269 TTNKKFTQLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAG 328
T + FT+L EL S + K GK +R + ++A ++ EKPE++ EE++ +
Sbjct: 414 TKDGGFTEL-ELASAKNTTQQLEAKAGK-LRDLDEIIAPKI-EKPEDLEEEIMETEEIQE 470
Query: 329 WCTEML-QAYLIMNDDIMDGSST 350
T+M+ + +I+N+D + +T
Sbjct: 471 GITDMIAKLSVIINNDNVPSVNT 493
>SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1378
Score = 33.5 bits (73), Expect = 0.49
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 269 TTNKKFTQLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAG 328
T + FT+L EL S + K GK +R + ++A ++ EKPE++ EE++ +
Sbjct: 9 TKDGGFTEL-ELASAKNTTQQLEAKAGK-LRDLDEIIAPKI-EKPEDLEEEIMETEEIQE 65
Query: 329 WCTEML-QAYLIMNDDIMDGSST 350
T+M+ + +I+N+D + +T
Sbjct: 66 GITDMIAKLSVIINNDNVPSVNT 88
>SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 33.5 bits (73), Expect = 0.49
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 269 TTNKKFTQLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAG 328
T + FT+L EL S + K GK +R + ++A ++ EKPE++ EE++ +
Sbjct: 30 TKDGGFTEL-ELASAKNTTQQLEAKAGK-LRDLDEIIAPKI-EKPEDLEEEIMETEEIQE 86
Query: 329 WCTEML-QAYLIMNDDIMDGSST 350
T+M+ + +I+N+D + +T
Sbjct: 87 GITDMIAKLSVIINNDNVPSVNT 109
>SB_11999| Best HMM Match : B5 (HMM E-Value=7)
Length = 103
Score = 33.1 bits (72), Expect = 0.65
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 269 TTNKKFTQLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAG 328
T + FT+L EL S + K GK +R + ++A ++ EKPE++ EE++ +
Sbjct: 30 TKDGGFTEL-ELASAKNTTHQLEAKAGK-LRDLDEIIAPKI-EKPEDLEEELMETEEIQE 86
Query: 329 WCTEML-QAYLIMNDD 343
T+M+ + +I+N+D
Sbjct: 87 GITDMIAKLSVIINND 102
>SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1816
Score = 32.7 bits (71), Expect = 0.86
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 269 TTNKKFTQLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAG 328
T + FT+L EL S + K GK +R + ++A ++ EKPE++ EE++ +
Sbjct: 363 TKDGGFTKL-ELASAKNTTHQLEAKAGK-LRDLDEIIAPKI-EKPEDLEEEIMETEEIQE 419
Query: 329 WCTEML-QAYLIMNDDIMDGSST 350
T+M+ + +I+N+D + +T
Sbjct: 420 GITDMIAKLSVIINNDNVPSVNT 442
>SB_6325| Best HMM Match : DUF1472 (HMM E-Value=2.5)
Length = 376
Score = 31.5 bits (68), Expect = 2.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 500 DIQEGKCSWLAVNALQRCNDAQRTLFAQNYASKDPDDV 537
D + KCSW N+++ C++ + + NY S+ P V
Sbjct: 122 DKKHKKCSWYCGNSVKACDERRERIKPPNYVSRIPRSV 159
>SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 29.5 bits (63), Expect = 8.0
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 21 LPEVIMTLQNKSKLSEVPQIGD-WLKKTLWRTSMGQHLDHVTGNRKTDYSSFTLDR 75
LP + L++++ +++V Q W+KKTL +T++G H D SSF L+R
Sbjct: 248 LPGKVFCLESEATVTDVLQDSLLWIKKTLQKTTLG----HSNQTCMHDGSSFRLER 299
>SB_7912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1020
Score = 29.5 bits (63), Expect = 8.0
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 493 VTGKKGTDIQEGKCSWLAVNA-LQRCND 519
V+G DI++GK S LA++A L RCND
Sbjct: 883 VSGNPPKDIKDGKVSELALDAMLTRCND 910
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,511,295
Number of Sequences: 59808
Number of extensions: 747677
Number of successful extensions: 1603
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1598
Number of HSP's gapped (non-prelim): 14
length of query: 592
length of database: 16,821,457
effective HSP length: 86
effective length of query: 506
effective length of database: 11,677,969
effective search space: 5909052314
effective search space used: 5909052314
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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