GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001927-TA|BGIBMGA001927-PA|IPR000092|Polyprenyl
synthetase, IPR008949|Terpenoid synthase
         (592 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical pr...   176   3e-44
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ...    35   0.19 
Z54284-2|CAA91060.2|  157|Caenorhabditis elegans Hypothetical pr...    31   2.3  
AC024817-48|AAM97976.1|  401|Caenorhabditis elegans Hypothetical...    30   4.0  
Z70753-8|CAA94763.1|  137|Caenorhabditis elegans Hypothetical pr...    30   5.3  
U88308-3|AAB42329.2|  430|Caenorhabditis elegans Resistance to i...    30   5.3  
U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q (ubi...    29   9.2  

>Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical
           protein R06C1.2 protein.
          Length = 352

 Score =  176 bits (429), Expect = 3e-44
 Identities = 102/303 (33%), Positives = 170/303 (56%), Gaps = 19/303 (6%)

Query: 285 KKVLEYNVKGGKKIRG---ITTVLAYELFEKPENVTEEMVRLARVAGWCTEMLQAYLIMN 341
           + + +  V GGK  R    + T+ A +   + E  T+E+  +   A    E++Q++ ++ 
Sbjct: 42  RNLFDNTVIGGKYSRASLCVDTIRALQPHLRDE--TQELQAVCEAAA-TLEIIQSFYLIA 98

Query: 342 DDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYGSIYEILKIYFGKAKEYADILDIFNE 401
           DDIMD S TRRG PCW+R   VG+ AINDA ++   + +IL++          + + + +
Sbjct: 99  DDIMDNSETRRGKPCWFRREGVGMSAINDAFIMDSFVEDILRLALPGHVNLDRLCEAYRK 158

Query: 402 ALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKTSYYSIKLPVVLGLILTQNREN 461
           +   T +GQ LD +  ++     S FT +RY  +V+ KTS+Y++  P+ + LI++     
Sbjct: 159 SKQKTLIGQFLDTSSVNQ----ISSFTWDRYELMVENKTSHYTVFHPIQMALIISDVL-- 212

Query: 462 APIEDIEGICFEIGKLFQIQDDFMDCFGNETVTGKKGTDIQEGKCSWLAVNALQRCNDAQ 521
           A    ++ + ++IG LFQ QDDF+D +G+  +TGK GTDIQ+GKC+WLAV ALQ+ +   
Sbjct: 213 AYHGSVKKVAYQIGFLFQSQDDFLDVYGDPKITGKIGTDIQDGKCTWLAVRALQKMHKTP 272

Query: 522 RTL-------FAQNYASKDPDDVASIKRLYEDLQLPKLYKEQEDEIHSGILKKINALPSS 574
                     F  ++ S DP+ V  IKR+Y++LQL + ++  E      I K I+ +P  
Sbjct: 273 EKWGAKLIEEFKTSFGSVDPEKVEKIKRIYDELQLKQEFRRFEKHFSGEIKKSISEIPDV 332

Query: 575 TSP 577
            +P
Sbjct: 333 INP 335



 Score =  113 bits (272), Expect = 3e-25
 Identities = 70/217 (32%), Positives = 114/217 (52%), Gaps = 16/217 (7%)

Query: 8   LEIINEKKMFDDLLPEVI-MTLQNKSKLSEVPQIGDWLKKTLWRTSMGQHLDHVTGNRKT 66
           +  IN+  + D  + +++ + L     L  + +     +K+  +T +GQ LD  + N+  
Sbjct: 122 MSAINDAFIMDSFVEDILRLALPGHVNLDRLCEA---YRKSKQKTLIGQFLDTSSVNQ-- 176

Query: 67  DYSSFTLDRXXXXXXXXXXXXXXNLPVSLGLLLAENVDEKIYKSAQDICLEIGTMFQIQD 126
             SSFT DR                P+ + L++++ +    + S + +  +IG +FQ QD
Sbjct: 177 -ISSFTWDRYELMVENKTSHYTVFHPIQMALIISDVL--AYHGSVKKVAYQIGFLFQSQD 233

Query: 127 DFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQR-------TVFKACYGSSEPA 179
           DF+D +GD   TGK+GTDIQ+ KCTWLAV+ALQ+  +            FK  +GS +P 
Sbjct: 234 DFLDVYGDPKITGKIGTDIQDGKCTWLAVRALQKMHKTPEKWGAKLIEEFKTSFGSVDPE 293

Query: 180 HVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIP 216
            VE+IKR+Y++L L Q ++  EK     I + I  IP
Sbjct: 294 KVEKIKRIYDELQLKQEFRRFEKHFSGEIKKSISEIP 330


>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
           protein F52C12.4 protein.
          Length = 1635

 Score = 34.7 bits (76), Expect = 0.19
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 461 NAPIEDIEGICFEIGKLFQIQDDFMDCFGNETVTGKKGTDIQEGKCSWLAVNALQRCNDA 520
           +AP+  I G+     +L++   D + CF  +T T    T     K S L     ++   A
Sbjct: 501 HAPLPFIAGVDSRYFELYEDPPDDVTCFDLDTSTISFSTVRATFKTSMLPKKPAKQLKSA 560

Query: 521 QRTLFA----QNYASKDPDDVASIKRLYEDLQLPKLYKEQEDEIHSGILKKINAL 571
              +F     Q+Y++    D   I  + +DL   +  +E E+EIH   LK I ++
Sbjct: 561 LEDIFGKLQKQDYSTNSKSDGGFIP-VDQDLVKQRQRREFENEIHDAFLKFIASI 614


>Z54284-2|CAA91060.2|  157|Caenorhabditis elegans Hypothetical
           protein D2085.2 protein.
          Length = 157

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 255 ETFQDAWKGIIDNLTTNKKFTQLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKP 313
           + F+D  +G +D +  N    QL E+G + ++     +  G+ I   T +L    ++ P
Sbjct: 5   QQFRDEIRGFVDKMNENNFHWQLKEIGKYARETHLKTLSDGRVITSETHILYNSTYQVP 63


>AC024817-48|AAM97976.1|  401|Caenorhabditis elegans Hypothetical
           protein Y54G2A.35 protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 396 LDIF-NEALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKTSYYSIKLPVVLGLI 454
           +D+F + A +Y  +    D  MA R    Y + ++ +   ++ +   + S+ L V+L ++
Sbjct: 80  VDVFLSTASIYNLLAISFDRYMAVRQPIKYPIISSTKVVRLMTFLVWFCSLLLAVILFVL 139

Query: 455 LTQN-RENAPIEDIE 468
           LT N  ++ P +D +
Sbjct: 140 LTLNAHDSEPTKDCQ 154


>Z70753-8|CAA94763.1|  137|Caenorhabditis elegans Hypothetical
          protein F40F9.8 protein.
          Length = 137

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 12 NEKKMFDDLLPEVIMTLQNKSKLSEVPQ 39
          N +  FDDLLP V++ +QN+    + P+
Sbjct: 42 NGRVSFDDLLPRVVLAIQNEEWKDDTPK 69


>U88308-3|AAB42329.2|  430|Caenorhabditis elegans Resistance to
           inhibitors of cholinesteraseprotein 19 protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 8/141 (5%)

Query: 450 VLGLILTQNRENAPIEDIEGICFEIGKLFQIQDDFMDC--FGNETVTGKKGTDIQE--GK 505
           VLG  L +  +    E +  I   +G+        ++    G  T   K    ++   G 
Sbjct: 98  VLGKYLKEKGKIDKTEAVGRILIAVGRSLLFSSHRLNAARIGVSTFYNKLSVFVERAIGD 157

Query: 506 CSWLAVNALQRCNDAQR-TLFAQNYASK--DPDDVASIKRLYEDLQLPKLYKEQEDEIHS 562
           CS   + A+Q C    R +L      S+  DP+   S+++  E     K  KE+ D + +
Sbjct: 158 CSQ-TIEAVQMCRTEYRGSLLWMKKTSEELDPEVDGSMEKFREAQTTVKSNKERLDRLKT 216

Query: 563 GILKKINALPSSTSPAIFFKL 583
             L+K++ L +S S  + + L
Sbjct: 217 DTLQKVDLLSASRSNLLSYVL 237


>U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 1 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 98  LLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQ 146
           +LA+  D K+++ A +    +G  FQ+ DD +D      + GK V  D++
Sbjct: 256 ILADGSDLKLHEIAFEYGRNLGIAFQLADDLLDFIATADEMGKPVAADLK 305


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,023,259
Number of Sequences: 27539
Number of extensions: 587155
Number of successful extensions: 1410
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1400
Number of HSP's gapped (non-prelim): 9
length of query: 592
length of database: 12,573,161
effective HSP length: 85
effective length of query: 507
effective length of database: 10,232,346
effective search space: 5187799422
effective search space used: 5187799422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)