GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001927-TA|BGIBMGA001927-PA|IPR000092|Polyprenyl
synthetase, IPR008949|Terpenoid synthase
         (592 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   1.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   7.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   7.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   7.1  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   9.3  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 175 SSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPI 217
           S EP  +  +   Y+  +      + +K  Y N I  IE IP+
Sbjct: 76  SKEPKIISSLSNNYKYSNYNNYNNYNKKLYYKNYIINIEQIPV 118


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 240 SSAYAASVSQIAKERETFQDAWKG----IIDNLTTNKKFTQLPELGSWVKKVLEYNV 292
           SSA + + S++   R T  D        +++NL  N +  QLP  G     V++ N+
Sbjct: 12  SSAASKTSSKVMLTRGTVNDIVSRNITMVLENLLMNYENNQLPTHGKGTPTVVKTNI 68



 Score = 22.6 bits (46), Expect = 9.3
 Identities = 16/58 (27%), Positives = 18/58 (31%)

Query: 282 SWVKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAGWCTEMLQAYLI 339
           SWV   +       +   GITTVL               VR A    W   M   Y I
Sbjct: 262 SWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFGYCI 319


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 197 YKHQEKAMYDNIIRQIENIPI 217
           Y +  K +Y N I  IE IP+
Sbjct: 109 YNNNYKKLYKNYIINIEQIPV 129


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 197 YKHQEKAMYDNIIRQIENIPI 217
           Y +  K +Y N I  IE IP+
Sbjct: 109 YNNNYKKLYKNYIINIEQIPV 129


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 10/51 (19%), Positives = 24/51 (47%)

Query: 491 ETVTGKKGTDIQEGKCSWLAVNALQRCNDAQRTLFAQNYASKDPDDVASIK 541
           +T T ++  ++ E   +W + N  Q   +  R ++  +  + +  D+A  K
Sbjct: 173 KTATPQQAQEVHEKLRNWFSKNVNQTVAETVRIIYGGSVTAGNAKDLAKEK 223


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,901
Number of Sequences: 429
Number of extensions: 6582
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 6
length of query: 592
length of database: 140,377
effective HSP length: 62
effective length of query: 530
effective length of database: 113,779
effective search space: 60302870
effective search space used: 60302870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)