GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001926-TA|BGIBMGA001926-PA|IPR000092|Polyprenyl
synthetase, IPR008949|Terpenoid synthase
         (427 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   4.1  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   5.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   5.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   5.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   5.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   5.5  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 364 YGVNKPEAIARIKDLYEELQL 384
           +G N+ EA  R+KDL+ E  L
Sbjct: 571 WGRNEQEAFDRVKDLFLEAVL 591


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 123 LQYNVPNGKKNRGLATILAYKMLEKKENLTPEN 155
           L Y+VP+  K      ++AY +    E++T +N
Sbjct: 192 LSYHVPSLSKYLDFINVMAYDLHGSWESVTGQN 224


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%)

Query: 376  KDLYEELQLPHTYSVFEETTYDLLRTQIQQVTR 408
            KD++E     H    FEE  YD  R  +Q   R
Sbjct: 1517 KDVFEN---GHVNKAFEEDNYDHRRNSLQMQQR 1546


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%)

Query: 376  KDLYEELQLPHTYSVFEETTYDLLRTQIQQVTR 408
            KD++E     H    FEE  YD  R  +Q   R
Sbjct: 1517 KDVFEN---GHVNKAFEEDNYDHRRNSLQMQQR 1546


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%)

Query: 376  KDLYEELQLPHTYSVFEETTYDLLRTQIQQVTR 408
            KD++E     H    FEE  YD  R  +Q   R
Sbjct: 1517 KDVFEN---GHVNKAFEEDNYDHRRNSLQMQQR 1546


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%)

Query: 376  KDLYEELQLPHTYSVFEETTYDLLRTQIQQVTR 408
            KD++E     H    FEE  YD  R  +Q   R
Sbjct: 1517 KDVFEN---GHVNKAFEEDNYDHRRNSLQMQQR 1546


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,197
Number of Sequences: 317
Number of extensions: 4161
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 6
length of query: 427
length of database: 114,650
effective HSP length: 59
effective length of query: 368
effective length of database: 95,947
effective search space: 35308496
effective search space used: 35308496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)