Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001926-TA|BGIBMGA001926-PA|IPR000092|Polyprenyl
synthetase, IPR008949|Terpenoid synthase
(427 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44) 138 1e-32
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.44
SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.1
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.1
SB_784| Best HMM Match : WAPL (HMM E-Value=2.4e-18) 30 4.1
SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16) 30 4.1
SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28) 29 5.5
SB_24425| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.5
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 29 9.5
>SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)
Length = 303
Score = 138 bits (333), Expect = 1e-32
Identities = 64/170 (37%), Positives = 107/170 (62%), Gaps = 1/170 (0%)
Query: 84 VSKDQSREFMAVFPDIVRDLTETGKH-IDVPEASKWLAKLLQYNVPNGKKNRGLATILAY 142
++ D + F FP V DL + ++ + + ++ KWL ++L+YNVP GK+NRGL+ I +
Sbjct: 13 LTSDDWKLFDDAFPGFVNDLVQEEENDLAIGDSIKWLREVLEYNVPGGKRNRGLSVIGSL 72
Query: 143 KMLEKKENLTPENILLANVMGWCVEMFHTHQLLLNDIMEGTTMRRGVPCWHRRPDVGLNG 202
+ L ++E+ T E++ +A ++GWCVE F L+ +DIM+ + RRG PCW+R+P+VG
Sbjct: 73 RHLIREEHFTDEHLRVALLLGWCVEWFQAFFLVADDIMDQSMTRRGQPCWYRQPEVGNIA 132
Query: 203 INDAALIQSAMYTSLKRHFNSKPYYNYVLETFNEMLMKCSMGHYVQKLML 252
IND +I+ ++ LK+H + YY V+E F+E +K H K++L
Sbjct: 133 INDGIMIEQTVFRLLKKHIKHQSYYVDVVELFHEAGIKDEASHANAKIIL 182
Score = 137 bits (331), Expect = 2e-32
Identities = 63/134 (47%), Positives = 89/134 (66%)
Query: 292 GVDDPETHRQAKTILLKMGEFFQIQDDFLDCFGDPTVTEKYGTDIQDGKCTWLAVVALQR 351
G+ D +H AK ILL+MGEFFQIQDD++D FGD +VT K GTDI++GKCTWL V AL+R
Sbjct: 168 GIKDEASHANAKIILLEMGEFFQIQDDYIDVFGDASVTGKVGTDIEEGKCTWLVVQALKR 227
Query: 352 ATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLP 411
A Q I+++N G+N EA A++K +Y EL L + +EE +Y + I + + LP
Sbjct: 228 ANAQQLTIIKENLGINDIEASAKVKRVYRELNLEQVFHEYEEASYQRIIDLISKHSGDLP 287
Query: 412 HELFFKILDNIFRR 425
E+F + I++R
Sbjct: 288 DEVFLDFVRKIYKR 301
>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1152
Score = 33.1 bits (72), Expect = 0.44
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 354 PAQKQIMEDN-YGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPH 412
P+ +++E + Y ++KP IK EL P Y + E + Y+L + I ++++ +
Sbjct: 534 PSIYELLEPSIYELSKPSIYELIKPSIYELSKPSIYELLEPSIYELSKPSIYELSKPFMY 593
Query: 413 EL 414
EL
Sbjct: 594 EL 595
Score = 29.9 bits (64), Expect = 4.1
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 364 YGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNIF 423
Y ++KP IK E+ P Y V + + Y+LL I ++++ EL ++ +
Sbjct: 633 YELSKPPIYKLIKPFIYEVIKPFIYEVSKPSIYELLEPSIYELSKPSVFELIKPSINELS 692
Query: 424 RRSV 427
+ S+
Sbjct: 693 KPSI 696
>SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 30.3 bits (65), Expect = 3.1
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 311 EFFQIQDDFLDCFGDPTVTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPE 370
E F ++ D L + + T + DGK W+ ++ ++E G+N+PE
Sbjct: 273 EDFMVEIDILSECKHKNLVGLFETFLHDGKL-WM-MLEFCSGGALDDLMLELERGLNEPE 330
Query: 371 AIARIKDLYEELQLPHTYSV 390
A + L+E LQ H + V
Sbjct: 331 IRAVTRQLFEGLQFLHNHKV 350
>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 30.3 bits (65), Expect = 3.1
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 251 MLKTDK-PDLSLFTMEKYEAITKYKTSYYTFQMPV-SLALLMTGVDDPETHRQAKTILLK 308
ML +D D++L+ AI +YK + F+ P+ S+ + V HR I+
Sbjct: 764 MLASDTMTDMNLWAQTLMAAILQYKD--FQFETPIHSIEAQLASVKQDPNHRNRFNIITS 821
Query: 309 MGEF-FQIQDDF 319
F FQ+++DF
Sbjct: 822 QKTFSFQVENDF 833
>SB_784| Best HMM Match : WAPL (HMM E-Value=2.4e-18)
Length = 539
Score = 29.9 bits (64), Expect = 4.1
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 75 MPMATRGLAVSKDQSREFMA--VFPDIVRDL---TETGKHIDVPEASKW--LAKLLQYNV 127
MP T G SK + +E + +F ++ D+ T TG +DVP+ S W ++K ++Y
Sbjct: 1 MPKYT-GKTYSKSRKQECKSSSIFDEVKNDVESKTTTGSTLDVPKKSSWTRISKAVEYTK 59
Query: 128 PNGKKNR 134
K +
Sbjct: 60 EQSPKKK 66
>SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)
Length = 713
Score = 29.9 bits (64), Expect = 4.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 349 LQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPH 386
LQR ++M D VN+ +A+A KD Y++ PH
Sbjct: 292 LQRMPEQLHRVMADRKQVNERDAVALQKDCYKQTVKPH 329
>SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)
Length = 265
Score = 29.5 bits (63), Expect = 5.5
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 52 TGPKRLLKLQKYHRFLSTLTPQEMPMATRGLAVSKDQSREFMAVFPDIVRDLTETGKHID 111
+G KRL++ ++ +R L +TP+ + + A +S++ P V + G D
Sbjct: 127 SGDKRLMRDKQVYRNLPEVTPEALEQVKKNYAWVAGESQKLNKHNPGHV--VVFMGSASD 184
Query: 112 VPEASKWLAKLLQYNVP 128
+ K A L +NVP
Sbjct: 185 IDHCKKIEAALKSFNVP 201
>SB_24425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 28.7 bits (61), Expect = 9.5
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 89 SREFMAVFPDIVRDLTETGKHIDVPEASKWLAKLLQYNVPNGKKNRGLATILAYKMLEKK 148
S E + ++V D ++T +D+ E ++ L+ + + K N L I K L+K+
Sbjct: 327 SSEGIIALAEVVAD-SKTLLRLDLRENDPYVGGLMALAL-SLKVNNSLVRIDLDKELKKE 384
Query: 149 ENL-TPENILLANVMGWC 165
+ T + ILLA++ G+C
Sbjct: 385 PGMETTQRILLADIYGYC 402
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 28.7 bits (61), Expect = 9.5
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 21 RHISKTTSVTNSDAMAPRLDQSASKSPQAEETGPKRLLKLQKY---HRFLSTLTPQEMPM 77
R IS +S +++++ PR++ SA +P + + PKR+ K + + R LS ++ P
Sbjct: 2344 RTISPASSRSSANS-GPRVEHSAGSTPSFDRSDPKRISKERIFVIKGRRLSVEQDKDKPD 2402
Query: 78 ATRGLAVSKDQS 89
T+ L ++ +
Sbjct: 2403 GTKTLESARSSA 2414
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.133 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,772,697
Number of Sequences: 59808
Number of extensions: 554410
Number of successful extensions: 1233
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1212
Number of HSP's gapped (non-prelim): 26
length of query: 427
length of database: 16,821,457
effective HSP length: 84
effective length of query: 343
effective length of database: 11,797,585
effective search space: 4046571655
effective search space used: 4046571655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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