GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001926-TA|BGIBMGA001926-PA|IPR000092|Polyprenyl
synthetase, IPR008949|Terpenoid synthase
         (427 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical pr...   159   5e-39
AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical ...    31   1.6  
Z82268-4|CAB05199.1|  741|Caenorhabditis elegans Hypothetical pr...    31   2.1  
Z68493-10|CAA92797.2|  329|Caenorhabditis elegans Hypothetical p...    29   6.3  
AF016430-9|AAB65374.1|  467|Caenorhabditis elegans Hypothetical ...    29   6.3  
U37548-2|ABK57090.1|  452|Caenorhabditis elegans Sulfatase domai...    29   8.3  
U37548-1|AAA79198.2|  488|Caenorhabditis elegans Sulfatase domai...    29   8.3  

>Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical
           protein R06C1.2 protein.
          Length = 352

 Score =  159 bits (385), Expect = 5e-39
 Identities = 87/248 (35%), Positives = 142/248 (57%), Gaps = 13/248 (5%)

Query: 166 VEMFHTHQLLLNDIMEGTTMRRGVPCWHRRPDVGLNGINDAALIQSAMYTSLKRHFNSKP 225
           +E+  +  L+ +DIM+ +  RRG PCW RR  VG++ INDA ++ S +   L+       
Sbjct: 88  LEIIQSFYLIADDIMDNSETRRGKPCWFRREGVGMSAINDAFIMDSFVEDILRLALPGHV 147

Query: 226 YYNYVLETFNEMLMKCSMGHYVQKLMLKTDKPDLSLFTMEKYEAITKYKTSYYTFQMPVS 285
             + + E + +   K  +G ++    +      +S FT ++YE + + KTS+YT   P+ 
Sbjct: 148 NLDRLCEAYRKSKQKTLIGQFLDTSSVN----QISSFTWDRYELMVENKTSHYTVFHPIQ 203

Query: 286 LALLMTGVDDPETHRQAKTILLKMGEFFQIQDDFLDCFGDPTVTEKYGTDIQDGKCTWLA 345
           +AL+++ V     H   K +  ++G  FQ QDDFLD +GDP +T K GTDIQDGKCTWLA
Sbjct: 204 MALIISDV--LAYHGSVKKVAYQIGFLFQSQDDFLDVYGDPKITGKIGTDIQDGKCTWLA 261

Query: 346 VVALQR--ATPAQ--KQIMED---NYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDL 398
           V ALQ+   TP +   +++E+   ++G   PE + +IK +Y+ELQL   +  FE+     
Sbjct: 262 VRALQKMHKTPEKWGAKLIEEFKTSFGSVDPEKVEKIKRIYDELQLKQEFRRFEKHFSGE 321

Query: 399 LRTQIQQV 406
           ++  I ++
Sbjct: 322 IKKSISEI 329


>AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical
           protein BE0003N10.1 protein.
          Length = 745

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 168 MFHTHQLLLNDIMEGTTMRRGVPCWHRRPD 197
           ++ T+  L+  ++  TT+R G+ C  RRPD
Sbjct: 312 IYRTYSTLVKKVLRDTTLRTGIRCDGRRPD 341


>Z82268-4|CAB05199.1|  741|Caenorhabditis elegans Hypothetical
           protein F52B11.3 protein.
          Length = 741

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)

Query: 323 FGDPTVTEKYGTDIQDGKCTWLAVVALQRATPAQ 356
           F  PTV+   GT I+DGK   L VV+L    P Q
Sbjct: 434 FPPPTVSSDCGTVIRDGKMEALVVVSLDGVLPHQ 467


>Z68493-10|CAA92797.2|  329|Caenorhabditis elegans Hypothetical
           protein C33A12.14 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 256 KPDLSLFTMEKYEAITKYKTSYYTFQMPVSLALLMTGVDDPETHRQAKTILLKM 309
           +P+  L T+  + + T Y    Y F MP+   +++T    P+ H +  +I++++
Sbjct: 104 EPNKWLLTISFFTSYTNYTAMIYPFFMPIVRLIIIT---HPKNHNKINSIVMRI 154


>AF016430-9|AAB65374.1|  467|Caenorhabditis elegans Hypothetical
           protein C05C8.7 protein.
          Length = 467

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 5/34 (14%)

Query: 136 LATILAYKMLEKKENLTPENILLANVMGWCVEMF 169
           L ++L YKM E+K+ L PEN L       CV+M+
Sbjct: 310 LCSVLNYKMTEQKDYLVPENKLTE-----CVDMY 338


>U37548-2|ABK57090.1|  452|Caenorhabditis elegans Sulfatase domain
           protein protein3, isoform b protein.
          Length = 452

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 176 LNDIMEGTTMRRGVPCWHRRPDVGLNGINDAALIQSAMYTSLKRHFNSKPYYNYV 230
           L  +++G  +   V      PD   NG+    L      + L  H NSKP++ ++
Sbjct: 139 LKRVVKGLDLFEEVGSGKSVPDFSQNGVYSTDLFTDVAMSVLDNHNNSKPFFMFL 193


>U37548-1|AAA79198.2|  488|Caenorhabditis elegans Sulfatase domain
           protein protein3, isoform a protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 176 LNDIMEGTTMRRGVPCWHRRPDVGLNGINDAALIQSAMYTSLKRHFNSKPYYNYV 230
           L  +++G  +   V      PD   NG+    L      + L  H NSKP++ ++
Sbjct: 175 LKRVVKGLDLFEEVGSGKSVPDFSQNGVYSTDLFTDVAMSVLDNHNNSKPFFMFL 229


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,377,498
Number of Sequences: 27539
Number of extensions: 430324
Number of successful extensions: 1016
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1008
Number of HSP's gapped (non-prelim): 7
length of query: 427
length of database: 12,573,161
effective HSP length: 83
effective length of query: 344
effective length of database: 10,287,424
effective search space: 3538873856
effective search space used: 3538873856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)