Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001925-TA|BGIBMGA001925-PA|IPR010405|Cofactor of BRCA1
         (587 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   4.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   5.9  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 534 ALQPGTQHNESVHKLYETLQQKLNAQTEP 562
           A  PG  H+E++    E L  K N+ T P
Sbjct: 15  ARSPGGDHSENMQDEPENLSNKSNSITVP 43



 Score = 22.6 bits (46), Expect = 7.8
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 404 ESAITTIEHSGPPPDACEAYMRESSVCGVIAMYYTLHAAK 443
           +  +  IEH    P+ C    R  S    + M+Y  H  +
Sbjct: 121 QQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGE 160


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/46 (19%), Positives = 22/46 (47%)

Query: 523 LPETRIQTLMKALQPGTQHNESVHKLYETLQQKLNAQTEPGPSATE 568
           LPE+R+Q   K  +   +  +  H   +++++    + +  P  T+
Sbjct: 108 LPESRVQVWFKNRRAKCRQQQKQHNQQQSVEKSSKLKNKSAPILTK 153


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.137    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,724
Number of Sequences: 317
Number of extensions: 4639
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 587
length of database: 114,650
effective HSP length: 61
effective length of query: 526
effective length of database: 95,313
effective search space: 50134638
effective search space used: 50134638
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)