Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001925-TA|BGIBMGA001925-PA|IPR010405|Cofactor of BRCA1
         (587 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77661-8|CAB01189.1|  438|Caenorhabditis elegans Hypothetical pr...    29   6.9  

>Z77661-8|CAB01189.1|  438|Caenorhabditis elegans Hypothetical
           protein F40G12.10 protein.
          Length = 438

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 355 SAWVMIDSQEFK-------EPKLDSQCVTKYLPALMSLMVDDQVRALHNKLPPDERESAI 407
           S W+M+ SQ+ +       E +LD   +++Y P          +R  + K  P   E A 
Sbjct: 222 SFWIMVASQKIQRLFILLGEEELDKPTLSEYFPE--DFKEFKTIRVNNRKTVPKTEEQAN 279

Query: 408 TTIEHSGPPPDACEAYMRESSVC 430
           T + +   P D  EA      +C
Sbjct: 280 TQLYYEVVPKDCAEAPFAMIEIC 302


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.137    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,068,569
Number of Sequences: 27539
Number of extensions: 509697
Number of successful extensions: 1135
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1135
Number of HSP's gapped (non-prelim): 1
length of query: 587
length of database: 12,573,161
effective HSP length: 85
effective length of query: 502
effective length of database: 10,232,346
effective search space: 5136637692
effective search space used: 5136637692
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)