GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001925-TA|BGIBMGA001925-PA|IPR010405|Cofactor of BRCA1
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    28   3.1  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    27   5.5  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   7.3  
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    27   9.6  

>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 448 GALLRILSILGSCKDGRAYEDPFLHALVALLVQLPDEFQGEDFSTVL 494
           G L  +L     C DG A   PFL+  + L+++ P    G D+  ++
Sbjct: 163 GHLRNMLLAESGCNDGMAI--PFLYLAIYLIIEKPARHAGRDWVCII 207


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 124 KNIPHIDDKYLRVLVRDRELYNDTDTEVKRQIWQDNQSLF--GDEVSPLLSQYIREKEDV 181
           KN     DKY + L++   ++     E +  +W   +SLF    E S +L   +  KE V
Sbjct: 46  KNYEEAVDKYGQALMQSESIHGSESLENRNVLWLYGKSLFQIAIENSQVLGNALGAKESV 105


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 119 IMGILKNIPHIDDKYLRVLVRDRELYNDTDTEVKRQI 155
           ++   K+I  +DD    VL +  EL+ DTD   +RQ+
Sbjct: 437 VISFRKSILSVDDTVANVL-KSNELFRDTDQYTQRQM 472


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 379 LPALMSLMVDDQVRALHNKLPPDERESAITTIEHSGP-PPDACEAYMRESSVC 430
           L  + +L  D   RA +NKL P+E +    TI + G  P D   A +     C
Sbjct: 369 LAEISTLAKDYGQRARNNKLKPEEYQGGTFTISNLGMFPVDQFTAIINPPQAC 421


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,966
Number of Sequences: 5004
Number of extensions: 94199
Number of successful extensions: 246
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 4
length of query: 587
length of database: 2,362,478
effective HSP length: 77
effective length of query: 510
effective length of database: 1,977,170
effective search space: 1008356700
effective search space used: 1008356700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)