Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001925-TA|BGIBMGA001925-PA|IPR010405|Cofactor of BRCA1
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0032 - 247971-248107,248369-248468,248861-248959,249617-24... 35 0.16
12_01_0702 - 6006553-6007350,6010743-6011270 33 0.84
08_01_0551 + 4840926-4841651 33 0.84
05_03_0525 + 15002846-15003048,15004814-15004937,15005458-150054... 32 1.1
06_01_0167 - 1302685-1302801,1315532-1315960 31 2.6
04_01_0292 + 3880298-3881098 31 2.6
04_01_0104 - 1087578-1087702,1088765-1088835,1091542-1092329 31 2.6
08_02_0206 + 14286721-14287239,14291236-14291466,14291557-14292030 31 3.4
04_03_0275 + 13751636-13751818,13751957-13752101,13752721-13752827 31 3.4
03_05_0875 - 28434894-28435082,28435173-28435247,28435399-284354... 31 3.4
12_02_0245 - 16290734-16291465 30 4.5
12_02_0215 - 15794278-15795069 30 5.9
09_02_0183 + 5466953-5467741 30 5.9
09_02_0182 + 5430380-5430694,5460162-5460950 30 5.9
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 30 5.9
05_03_0298 - 11944750-11945541 30 5.9
12_02_0560 - 20486368-20487159 29 7.8
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 29 7.8
06_02_0115 - 12016114-12016905 29 7.8
>01_01_0032 -
247971-248107,248369-248468,248861-248959,249617-249781,
249860-249940,250316-250384,250695-250790,252232-252282,
253361-253419,254255-254324,254325-254553,254674-255098,
255361-255441
Length = 553
Score = 35.1 bits (77), Expect = 0.16
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 422 AYMRESSVCGVIAMYYTLHAAKLRDRGALLRILSILGSCKDGRAYEDPFLHA 473
AY+ E +C V Y T+H ++RD G L+ + I C++ ++ FLH+
Sbjct: 194 AYLYEDLLCIVSLRYQTIHVLQIRDSGNLVEVRKIGAFCQED---DELFLHS 242
>12_01_0702 - 6006553-6007350,6010743-6011270
Length = 441
Score = 32.7 bits (71), Expect = 0.84
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 482 PDEFQGEDFSTVLFDEFFFAGLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQH 541
P + QG D + L E G+ D TRHL+++LW + E+R +T++ A Q+
Sbjct: 279 PRQPQGSDRGSYLETE----GIENDATTRHLVEMLW----AMDESRAETVLAAQDREDQN 330
Query: 542 NESVHKLYETLQQ 554
+ KL + + +
Sbjct: 331 RGKICKLEDKVDR 343
>08_01_0551 + 4840926-4841651
Length = 241
Score = 32.7 bits (71), Expect = 0.84
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 482 PDEFQGEDFSTVLFDEFFFAGLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQH 541
P + QG D + L E G+ D TRHL+++LW + ETR +T++ A ++
Sbjct: 82 PRQPQGSDRGSYLETE----GIENDATTRHLVEMLW----AMDETRAETVLAAQDREDRN 133
Query: 542 NESVHKLYETLQQ 554
+ KL + + +
Sbjct: 134 RGKICKLEDKVDR 146
>05_03_0525 +
15002846-15003048,15004814-15004937,15005458-15005481,
15005995-15006779,15006839-15006873,15007108-15007601,
15007951-15008452,15008725-15008867,15009523-15009576,
15010255-15010362,15010529-15010705,15011169-15011186,
15011561-15011938,15012125-15012310,15012356-15013205,
15013362-15013402,15013491-15013868,15014195-15014236,
15014528-15014678,15015621-15015670
Length = 1580
Score = 32.3 bits (70), Expect = 1.1
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 141 RELYNDTDTEVKRQIWQDNQSLFGDEVSPLLSQYIREKEDVLFDHENLTNLFFSPSP 197
R+LY + K+ + + Q+L G+ +P+ +E ++ DHE F+ P+P
Sbjct: 625 RQLYRHLERHHKKIVASEAQALHGNVETPIRMNKAKEFPKIVRDHEACLLSFYHPAP 681
>06_01_0167 - 1302685-1302801,1315532-1315960
Length = 181
Score = 31.1 bits (67), Expect = 2.6
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 482 PDEFQGEDFSTVLFDEFFFAGLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQH 541
P + QG D + L E G+ D TRHL+++LW + E+R +T++ A ++
Sbjct: 82 PRQPQGSDRGSYLETE----GIENDATTRHLVEMLW----AMDESRAETVLAAQDREDRN 133
Query: 542 NESVHKLYETL 552
+ KL + +
Sbjct: 134 RGKICKLEDKI 144
>04_01_0292 + 3880298-3881098
Length = 266
Score = 31.1 bits (67), Expect = 2.6
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 482 PDEFQGEDFSTVLFDEFFFAGLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQH 541
P + QG D + L E G+ D TRHL+++LW + E+R +T++ A ++
Sbjct: 103 PRQPQGSDRGSYLETE----GIENDATTRHLVEMLW----AMDESRAETVLAAQDREDRN 154
Query: 542 NESVHKLYETLQQ 554
+ KL + + +
Sbjct: 155 RGKICKLEDKVDR 167
>04_01_0104 - 1087578-1087702,1088765-1088835,1091542-1092329
Length = 327
Score = 31.1 bits (67), Expect = 2.6
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 482 PDEFQGEDFSTVLFDEFFFAGLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQH 541
P + QG D + L E G+ D TRHL+++LW + E+R +T++ A ++
Sbjct: 103 PRQPQGSDRGSYLETE----GIENDATTRHLVEMLW----AMDESRAETVLAAQDREDRN 154
Query: 542 NESVHKLYETLQQ 554
+ KL + + +
Sbjct: 155 RGKICKLEDKVDR 167
>08_02_0206 + 14286721-14287239,14291236-14291466,14291557-14292030
Length = 407
Score = 30.7 bits (66), Expect = 3.4
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 502 GLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQHNESVHKLYETLQQ 554
G+ D TRHL+++LW + ETR +T++ A ++ + KL + + +
Sbjct: 262 GIENDATTRHLVEMLW----AMDETRAETVLAAQDHEDRNRGKICKLEDKVDR 310
>04_03_0275 + 13751636-13751818,13751957-13752101,13752721-13752827
Length = 144
Score = 30.7 bits (66), Expect = 3.4
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 502 GLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQHNESVH-KLYETLQQKLNAQT 560
G+ D TRHL+++LW + E+R + + A Q+ + H + ++ QQ+ Q
Sbjct: 73 GIENDATTRHLVEMLW----AMDESRAEIVSAAQAREDQNRDGEHPQQWKWAQQQ--QQQ 126
Query: 561 EPGPSATEME 570
+P + T ME
Sbjct: 127 QPTTTTTTME 136
>03_05_0875 -
28434894-28435082,28435173-28435247,28435399-28435490,
28435721-28435835,28436019-28436188,28436237-28436310,
28436397-28436553,28436658-28436730,28436898-28436960,
28437067-28437341,28437710-28437816,28437884-28438788,
28439742-28440032
Length = 861
Score = 30.7 bits (66), Expect = 3.4
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 142 ELYNDTDTEVKRQIWQDNQSLFGDEVSPLL-SQYIREKEDVLFDHENLTNLFFSPSPKVR 200
E D + K + DN+ + D + S +R KED+ DHE L+N+F
Sbjct: 416 ENIEDRKQQEKSAHYIDNKEINNDPAATKQRSNNLRAKEDITNDHE-LSNVFVGAKFYNV 474
Query: 201 RQGAVVQKLAHMIGTS 216
R+ + K++ +GTS
Sbjct: 475 RKSPTLPKISISLGTS 490
>12_02_0245 - 16290734-16291465
Length = 243
Score = 30.3 bits (65), Expect = 4.5
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 501 AGLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQHNESVHKL 548
AG+ D TRHL+++LW + ETR + + A ++ E + KL
Sbjct: 97 AGIENDASTRHLVEMLW----AMDETRAEIVTAAQDREDRNREKICKL 140
>12_02_0215 - 15794278-15795069
Length = 263
Score = 29.9 bits (64), Expect = 5.9
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 482 PDEFQGEDFSTVLFDEFFFAGLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQH 541
P + QG D + L E G+ D T+HL+++LW + E+R +T++ A ++
Sbjct: 103 PRQPQGSDRGSYLETE----GIENDATTKHLVEMLW----AMDESRAETVLAAQDREDRN 154
Query: 542 NESVHKLYETLQQ 554
+ KL + + +
Sbjct: 155 RGKICKLEDKVDR 167
>09_02_0183 + 5466953-5467741
Length = 262
Score = 29.9 bits (64), Expect = 5.9
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 501 AGLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQHNESVHKLYETLQQ 554
AG+ D TRHL+++LW + ETR + ++ A ++ + KL + + +
Sbjct: 118 AGIENDATTRHLVEMLW----AMDETRAEIVLAAQDREDRNRGKICKLEDKVDR 167
>09_02_0182 + 5430380-5430694,5460162-5460950
Length = 367
Score = 29.9 bits (64), Expect = 5.9
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 501 AGLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQHNESVHKLYETLQQ 554
AG+ D TRHL+++LW + ETR + ++ A ++ + KL + + +
Sbjct: 223 AGIENDATTRHLVEMLW----AMDETRAEIVLAAQDREDRNRGKICKLEDKVDR 272
>08_01_0441 +
3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 29.9 bits (64), Expect = 5.9
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 482 PDEFQGEDFSTVLFDEFFFAGLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQH 541
P + QG D + L E G+ D T+HL+++LW + E+R +T++ A ++
Sbjct: 103 PRQPQGSDRGSYLETE----GIENDATTKHLVEMLW----AMDESRAETVLAAQDREDRN 154
Query: 542 NESVHKLYETLQQ 554
+ KL + + +
Sbjct: 155 RGKICKLEDKVDR 167
>05_03_0298 - 11944750-11945541
Length = 263
Score = 29.9 bits (64), Expect = 5.9
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 482 PDEFQGEDFSTVLFDEFFFAGLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQH 541
P + QG D + L E G+ D T+HL+++LW + E+R +T++ A ++
Sbjct: 103 PRQPQGSDRGSYLETE----GIENDATTKHLVEMLW----AMDESRAETVLAAQDREDRN 154
Query: 542 NESVHKLYETLQQ 554
+ KL + + +
Sbjct: 155 RGKICKLEDKVDR 167
>12_02_0560 - 20486368-20487159
Length = 263
Score = 29.5 bits (63), Expect = 7.8
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 482 PDEFQGEDFSTVLFDEFFFAGLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQH 541
P + QG D + L E G+ D T+HL+++LW + E+R +T++ A ++
Sbjct: 103 PRQPQGSDRGSYLETE----GIENDVTTKHLVEMLW----AMDESRAETVLAAQDREDRN 154
Query: 542 NESVHKLYETLQQ 554
+ KL + + +
Sbjct: 155 RGKICKLEDKVDR 167
>10_05_0026 +
8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 29.5 bits (63), Expect = 7.8
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 482 PDEFQGEDFSTVLFDEFFFAGLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQH 541
P + QG D + L E G+ D TRHL+++LW + ETR + ++ A ++
Sbjct: 103 PCQPQGSDRGSYLETE----GIENDATTRHLVEMLW----AMDETRAEIVLAAQDREDRN 154
Query: 542 NESVHKL 548
+ KL
Sbjct: 155 RGKICKL 161
>06_02_0115 - 12016114-12016905
Length = 263
Score = 29.5 bits (63), Expect = 7.8
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 482 PDEFQGEDFSTVLFDEFFFAGLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQH 541
P + QG D + L E G+ D T+HL+++LW + E+R +T++ A ++
Sbjct: 103 PRQPQGSDRGSYLETE----GIENDVTTKHLVEMLW----AMDESRAETVLAAQDREDRN 154
Query: 542 NESVHKLYETLQQ 554
+ KL + + +
Sbjct: 155 RGKICKLEDKVDR 167
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.137 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,334,564
Number of Sequences: 37544
Number of extensions: 583699
Number of successful extensions: 1263
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1261
Number of HSP's gapped (non-prelim): 19
length of query: 587
length of database: 14,793,348
effective HSP length: 86
effective length of query: 501
effective length of database: 11,564,564
effective search space: 5793846564
effective search space used: 5793846564
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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