GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001925-TA|BGIBMGA001925-PA|IPR010405|Cofactor of BRCA1
         (587 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58588| Best HMM Match : COBRA1 (HMM E-Value=0.00012)                94   2e-19
SB_27152| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.64 
SB_946| Best HMM Match : No HMM Matches (HMM E-Value=.)                33   0.85 
SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.6  
SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)        31   3.4  
SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26)                 30   4.5  

>SB_58588| Best HMM Match : COBRA1 (HMM E-Value=0.00012)
          Length = 421

 Score = 94.3 bits (224), Expect = 2e-19
 Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 7/140 (5%)

Query: 11  GLEEVGVPGQTFLRDALTSCTDPLKAIEEFQLENGIXXXXXXXXXXXXXXHGVRRLDFHT 70
           G E  G+PG   LR AL++ +D    IE FQ +NGI              HGVRRLDFH+
Sbjct: 3   GFERAGLPGIEHLRQALSNSSDLAATIESFQHDNGILLPSLQSALPFLDLHGVRRLDFHS 62

Query: 71  SVLEELREKLIAHIXXXXXXXXXXXXXXXXXXXXXXFPVVRVKALRPVIMGILKNIPHID 130
           SV+E LRE ++  +                      FP + VK LRPV++ ++K++P I+
Sbjct: 63  SVMEHLRESVLGKV-------KDLSTQKLEEILEQSFPFIHVKELRPVVVAVMKHLPKIN 115

Query: 131 DKYLRVLVRDRELYNDTDTE 150
           D+ L  +  D +LY D   E
Sbjct: 116 DECLEHIANDAKLYEDCPIE 135



 Score = 86.6 bits (205), Expect = 5e-17
 Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 2/173 (1%)

Query: 368 PKLDSQCVTKYLPALMSLMVDDQVRALHNKLPPDERESAITTIEHSGPPPDACEAYMRES 427
           P  + +  +K+LP +MSLMVD  +  L+ K+P D+ E  +  +             M  +
Sbjct: 133 PIENDELASKFLPFIMSLMVDSSLNTLNGKVPEDDIEEGL--VSDGRHLAHHFMHMMVSN 190

Query: 428 SVCGVIAMYYTLHAAKLRDRGALLRILSILGSCKDGRAYEDPFLHALVALLVQLPDEFQG 487
            V   +A  + LH    +D+ A+   L    S       ++  LH LV  LV + +EF  
Sbjct: 191 KVAFKLAWCFMLHLLHQKDKAAVFHALPWYVSPCQAHPLDEIELHILVTALVGMQEEFNQ 250

Query: 488 EDFSTVLFDEFFFAGLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQ 540
            +F  ++FD F     S+    RH L+LLWY++PK+   ++  ++ + QP ++
Sbjct: 251 SEFCDLIFDNFLLGLTSQTFAVRHTLRLLWYVYPKMDSHKVIHILTSTQPTSE 303


>SB_27152| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 33.1 bits (72), Expect = 0.64
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 383 MSLMVDDQVRALHNKLPPDERESAITTIEHSGPPPDACEAYMRESSVCGVIA--MYYTLH 440
           +S  +  Q R L      ++R   +TT+  + P P+A    + +S + G+    +  +L 
Sbjct: 29  VSSEISQQPRRLSVSSTEEDRGQELTTVRENNPVPNAL--IIGDSMIKGINENRLSRSLI 86

Query: 441 AAKLRDRGALLRILSILGSCKDGRAYEDPFLH 472
            +K+  RG     L  L S  D   YE  F+H
Sbjct: 87  VSKVYVRGGTKETLEYLKSLDDNVVYESVFIH 118


>SB_946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 32.7 bits (71), Expect = 0.85
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 145 NDTDTEVKRQIWQDNQSLFGDEVSPLLSQYIREKEDVLFDHENLTNLFFSPSPKVRRQGA 204
           +D DT +  Q W+  ++ FG     L+S      E+ +FD       FFSP P  + +G 
Sbjct: 104 SDLDTMLSPQAWKSVETAFGPHTVDLMSL----PENAMFDLSGRRLRFFSPFPCAKAEGT 159

Query: 205 VV 206
            V
Sbjct: 160 NV 161


>SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1720

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 11/38 (28%), Positives = 24/38 (63%)

Query: 141  RELYNDTDTEVKRQIWQDNQSLFGDEVSPLLSQYIREK 178
            R L  D +T+ +  +++  + +FGD  SP L+Q++ ++
Sbjct: 1312 RLLRRDLETDREPDVYEATRLVFGDRASPFLAQFVMQR 1349


>SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)
          Length = 1136

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 137 LVRDRELYNDTDTEVKRQIWQDNQSLFGDEVSPLLSQYIREKEDVLFDH 185
           +V  +   N  D  + R  W D  S+  ++++ L+S+Y R  E V  DH
Sbjct: 362 MVTGKVYVNSPDASLYRYSWTDMSSMVSEQLASLMSEYSRTTERV--DH 408


>SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26)
          Length = 765

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 401 DERESAITTIEHSGPPPDACEAYMRESSVCGVIAMYYTL 439
           +ERE+ I  ++ +GP     E ++ +++V G I +Y+ L
Sbjct: 422 EERETLIEWLKETGPDQPRLEEFLAKATVFGFIMLYFWL 460


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.137    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,567,589
Number of Sequences: 59808
Number of extensions: 677045
Number of successful extensions: 1563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1554
Number of HSP's gapped (non-prelim): 7
length of query: 587
length of database: 16,821,457
effective HSP length: 86
effective length of query: 501
effective length of database: 11,677,969
effective search space: 5850662469
effective search space used: 5850662469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)