GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001925-TA|BGIBMGA001925-PA|IPR010405|Cofactor of BRCA1
         (587 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7)...    32   0.92 
At5g16830.1 68418.m01972 syntaxin 21 (SYP21) / PEP12 homolog ide...    31   2.1  
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)...    29   6.5  
At1g05410.1 68414.m00549 expressed protein                             29   6.5  
At4g20700.1 68417.m03008 hypothetical protein                          29   8.6  

>At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 418

 Score = 32.3 bits (70), Expect = 0.92
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 379 LPALMSLMVDDQVRALHNKLPPDERESAITTIEHSGPPPDACEAYMRESS 428
           +P  M+L+ DD  R L +K+PP  R + I+   HSG   D  +  + ES+
Sbjct: 107 VPCDMNLITDDDFRDLVDKVPPGCRMTIISDSCHSGGLIDEAKEQIGEST 156


>At5g16830.1 68418.m01972 syntaxin 21 (SYP21) / PEP12 homolog
           identical to Syntaxin homolog (PEP12 homolog)
           (SP:Q39233) and syntaxin of plants 21 (GP:899122)
           {Arabidopsis thaliana}; contains Pfam profiles
           PF05739:SNARE domain and PF00804:  Syntaxin
          Length = 279

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 125 NIPHIDDKYLRVLVRDRELYNDTDTEVKRQIWQDNQSLFGDEVSPLLSQYIREKEDVLFD 184
           N P +D + LR+  +   L      EV   ++ DN+  F + +     Q IRE ED + D
Sbjct: 149 NAPELDTESLRISQQQALLLQSRRQEV---VFLDNEITFNEAIIEEREQGIREIEDQIRD 205

Query: 185 HENLTNLFFSPSPKVRRQGAVVQKLAHMIGTS 216
              +  +F   +  V  QG +V  ++  +  S
Sbjct: 206 ---VNGMFKDLALMVNHQGNIVDDISSNLDNS 234


>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 410

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 379 LPALMSLMVDDQVRALHNKLPPDERESAITTIEHSGPPPDACEAYMRESS 428
           +P  M+L+ DD+ R L  K+P +   + I+   HSG   D  +  + ES+
Sbjct: 107 VPCDMNLITDDEFRDLVEKVPKEAHITIISDSCHSGGLIDEAKEQIGEST 156


>At1g05410.1 68414.m00549 expressed protein
          Length = 471

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 407 ITTIEHSGPPPDACEAYMRESSVCGVIA-MYYTLHAAKLRDRGALLRILSILGSCKDGRA 465
           + ++EH G     CEA + E  +CG +A M   L A      G  +  L     C+   A
Sbjct: 195 LISLEHGGYSYIKCEAVVSEGHICGHVAHMNCALRAYLAGTIGGSMG-LDTEYYCRRCDA 253

Query: 466 YEDPFLHALVALLVQLPDEFQGEDFSTVLFDEFFFAGLSKDN 507
            +D F H    L +    E+QG+    +        G  +DN
Sbjct: 254 KKDLFPHVNKFLEICQTVEYQGDVEKILNLGICILRGAQRDN 295


>At4g20700.1 68417.m03008 hypothetical protein
          Length = 529

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 250 LHDLEVQDIISVDPCHKFTWCLDACIRERNVDIKRSRELQGFLDSIKKGQEQVLGDLSMT 309
           LH L+   + ++    + T+  + C+R  +VD   +++    L   K+   Q L DL+ +
Sbjct: 288 LHSLDTLFVQAIAEWDRLTYLYERCVRSLSVDATNAKDAHEALAVEKEKVAQALADLARS 347

Query: 310 LCD 312
             D
Sbjct: 348 QDD 350


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.137    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,451,007
Number of Sequences: 28952
Number of extensions: 485035
Number of successful extensions: 1077
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1073
Number of HSP's gapped (non-prelim): 6
length of query: 587
length of database: 12,070,560
effective HSP length: 85
effective length of query: 502
effective length of database: 9,609,640
effective search space: 4824039280
effective search space used: 4824039280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)