Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001924-TA|BGIBMGA001924-PA|IPR003961|Fibronectin, type
III, IPR013098|Immunoglobulin I-set, IPR008957|Fibronectin, type
III-like fold, IPR003962|Fibronectin, type III subdomain,
IPR003599|Immunoglobulin subtype, IPR003598|Immunoglobulin subtype 2,
IPR007110|Immunoglobulin-like
(1104 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 33 0.22
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 33 0.29
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 30 2.0
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 29 3.6
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 28 6.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 6.3
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 28 8.3
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 28 8.3
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 33.1 bits (72), Expect = 0.22
Identities = 34/166 (20%), Positives = 69/166 (41%), Gaps = 2/166 (1%)
Query: 385 SAPADIKAAVSSRNKILVSWLPPSSPNGVLVGYTLYMSVIEDGREEGTHKRMLSPSTLSH 444
S+P+ I +++SS + IL S P S + +++ + +S +S S ++
Sbjct: 609 SSPSSISSSISSSSTILSS--PTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTY 666
Query: 445 ETSRSPPRATHQFWVSASTRLGEGEATRVVTVLPSDSVPARITSFSRNIVTPWKENISLS 504
+S P +T S+ A+ + +PS S S S + +T +++
Sbjct: 667 SSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAM 726
Query: 505 CNKVGVPAPATTWTMNGVGLESTLRKNVSSDGTLTISMTQSADSGN 550
+ +P + T+ +TL +++S + S T S S N
Sbjct: 727 SSSSAIPTSVNSSTLITASSSNTLLSSITSSSAIVSSTTVSNISSN 772
Score = 30.3 bits (65), Expect = 1.6
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 1/123 (0%)
Query: 438 SPSTLSHETSRSPPRATHQFWVSASTRLGEGEATRVVTVLPSDSVPARITSFSRNIVTPW 497
S ST TS P T ++S +G G + + +++ + ITS VTP
Sbjct: 890 SLSTSIPVTSSVAPAVTSTGSETSSV-VGSGTDSATSSSWTAETSSSAITSSVAASVTPT 948
Query: 498 KENISLSCNKVGVPAPATTWTMNGVGLESTLRKNVSSDGTLTISMTQSADSGNYTCSVEN 557
+ + S + P+T + G S +VS T +++ + DS + + +
Sbjct: 949 SSSSASSWSSSSEVDPSTAASATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAAS 1008
Query: 558 IHG 560
+ G
Sbjct: 1009 VTG 1011
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 32.7 bits (71), Expect = 0.29
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 531 NVSSDGTLTISMTQSADSGNYTCSVENI--------HGRDEVTYTVEVKVPPQPPILAVV 582
N ++G L T S++SG+Y SV H ++ + + PP+ PI
Sbjct: 108 NTGANGALFSQSTNSSNSGSYRNSVTGATLPNAHAPHSQNRRRRSNHLNNPPEAPITEAS 167
Query: 583 DSYADSLHLQW--SDQGDGGSPILGYVINYKREHGDWEELQVEAGTSEHVLPNLWCGTRY 640
+ Y S HL++ + + L Y N ++ D E+ ++ + + +C +R+
Sbjct: 168 NEYVYSFHLEYVPLESNTFSASALEYSKNLDLKNLDESEVLMDGCQVVPISSSKFCCSRF 227
Query: 641 QLYIT 645
L T
Sbjct: 228 GLVST 232
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 648 NRIGTGLPCDIVHAYTKGTVPVKPKHSQMITLNTTTVTVW 687
+R+ T CDI+ KG V + H Q++ N+ ++W
Sbjct: 638 HRLRTIKDCDIIFVLEKGRVVEQGSHEQLMAKNSVYTSMW 677
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 674 SQMITLNTTTVTVWLDSWGDGGCGILYFVIEYREMSQPQWRLVSNS 719
SQ+ T T L G GC +L + +Y ++S +W + S S
Sbjct: 96 SQVKVFGTITEISALKGKGSNGCDLLIMLTDYAKVSTLEWDMQSQS 141
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 28.3 bits (60), Expect = 6.3
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query: 456 QFWVSASTRLGEGEATRVVTVLPSDSVPARITSFSRNIVTPWKENISLSCNKVGVPAPAT 515
+F + +T +G T VV + V +TS S T I + V V P
Sbjct: 701 EFTTTIATPVGTTAGTVVVDIPTPSWVTETVTSGSVGFTTTIATPIGTTAGTVLVDIPTP 760
Query: 516 TW-----TMNGVGLESTLRKNV-SSDGTLTISM-TQSADSGNY-TCSVE 556
+W T VG +T+ V ++ GT+ I + T +A S + +C+ +
Sbjct: 761 SWVTETVTSGSVGFTTTIATPVGTTAGTVLIDVPTPTASSSPFPSCNTQ 809
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 6.3
Identities = 49/236 (20%), Positives = 85/236 (36%), Gaps = 11/236 (4%)
Query: 330 YGNEDAVTKQISGLHTTLSGLRRYTNYSVTVCAFT-AAGDGVRAAPVY---CHTEEDVPS 385
Y + + ++ + T S YT+ VT +T ++ V + PV C T V
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLY 599
Query: 386 APADIKAAVS-SRNKILVSW---LPPSSPNGVLVGYTLYMSVIEDGREEGTHKRMLSPST 441
I + S S + VSW P + + V + + + R T S ST
Sbjct: 600 TSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSIST 659
Query: 442 LSHETSRSPPRATHQ---FWVSASTRLGEGEATRVVTVLPSDSVPARITSFSRNIVTPWK 498
S T+ S + F+ + +T T PS + ITS S + +
Sbjct: 660 SSSSTATSSTSFASESSSFYSNVTTSSSTVSTPPPTTSFPSTFTTSFITSSSLSSIPNNS 719
Query: 499 ENISLSCNKVGVPAPATTWTMNGVGLESTLRKNVSSDGTLTISMTQSADSGNYTCS 554
+ + G + + S + +S T ++S QS+ S ++T S
Sbjct: 720 TEVKTASTSSGTEIKTASTSSGSSSSSSYTPASSTSTTTSSVSSRQSSSSSSFTPS 775
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.9 bits (59), Expect = 8.3
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 457 FWVSASTRLGEGEATRVVTVLPSDSVPARITSFSRNIVTPWKENISLSCNKVGVPAPATT 516
F + +T +G T +V V V +TS S T I + V V P +
Sbjct: 731 FTTTIATPIGSTAGTVLVDVPTPSWVTETVTSGSVGFTTTIATPIGSTAGTVLVDIPTPS 790
Query: 517 W-----TMNGVGLESTLRKNV-SSDGTLTIS------MTQSADSGN--YTCSVENIHGRD 562
W T VG +T+ V ++ GT+ + +T++ SG+ +T ++ G
Sbjct: 791 WVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTT 850
Query: 563 EVTYTVEVKVP 573
T V+V P
Sbjct: 851 AGTVVVDVPTP 861
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 815 TTETVATESGVGESPSVAQLQNKANRDQQYLAARAQHPPPQHHYKHAS 862
+T+T+AT + SP++ + + D YL + +H H+S
Sbjct: 446 STKTLATTKEIQNSPTLVESSTVVHHDPSYLQNQTSEINDTNHSSHSS 493
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.129 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,782,894
Number of Sequences: 5004
Number of extensions: 198879
Number of successful extensions: 398
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 20
length of query: 1104
length of database: 2,362,478
effective HSP length: 80
effective length of query: 1024
effective length of database: 1,962,158
effective search space: 2009249792
effective search space used: 2009249792
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)
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