Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001924-TA|BGIBMGA001924-PA|IPR003961|Fibronectin, type
III, IPR013098|Immunoglobulin I-set, IPR008957|Fibronectin, type
III-like fold, IPR003962|Fibronectin, type III subdomain,
IPR003599|Immunoglobulin subtype, IPR003598|Immunoglobulin subtype 2,
IPR007110|Immunoglobulin-like
(1104 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481... 31 5.1
10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698... 31 5.1
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325... 31 5.1
07_03_1058 + 23631819-23631943,23632032-23632101,23632196-236333... 31 6.8
06_03_0560 + 22174655-22174720,22175208-22175615,22176540-22177787 31 6.8
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 30 8.9
07_01_0715 + 5463705-5463853,5463934-5464287,5464849-5464932,546... 30 8.9
07_01_0712 - 5381641-5381667,5382107-5382261,5382917-5383006,538... 30 8.9
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 30 8.9
>12_02_0616 -
21246374-21246462,21246605-21247702,21247800-21248110,
21248550-21249251,21252802-21252912,21253396-21253481,
21253753-21253862,21254085-21254236,21254656-21254765
Length = 922
Score = 31.1 bits (67), Expect = 5.1
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 100 IINYIVQYKEAPESWPSTPQKVIVPGSVTSASVQNLQPATSYHLRIIAENRLGQSEPSQP 159
I Y + Y + E PST I P V NLQP T Y RII+ G S+
Sbjct: 561 IKGYKLWYWNSREQ-PSTRVPAIFPKDQRRILVSNLQPCTEYAFRIISFTEYGDLGHSEC 619
Query: 160 VQVTTTEEV 168
T + E+
Sbjct: 620 KCFTKSVEI 628
>10_07_0144 -
13367579-13368805,13369540-13369578,13369662-13369826,
13370083-13370193
Length = 513
Score = 31.1 bits (67), Expect = 5.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 850 QHPPPQHHYKHASNEYIEDICPYATFQLTKPTAYSESSYSGNVYSGP 896
QHPPP HH+ H++ I PY T + P + +Y G + P
Sbjct: 326 QHPPPPHHHHHSAMNG-GGIWPYYTSGIAIPIYPAAPAYWGCMIPPP 371
>06_01_0456 -
3249662-3249710,3249838-3250451,3250694-3250780,
3251509-3252384,3252445-3252534,3252645-3252696,
3253117-3253168,3253265-3253363,3253444-3253528,
3253620-3253668,3253749-3253816,3254417-3254482,
3255690-3255741,3256685-3256767,3256915-3256946,
3257271-3257466,3258542-3258607,3259797-3259869,
3260010-3260224
Length = 967
Score = 31.1 bits (67), Expect = 5.1
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 110 APESWPSTPQKVIVPGSVTSASVQNLQPA-TSYHL-RIIAE--NRLGQSEPSQPVQVTTT 165
AP+++ T VPG A+ PA S+H+ R+++ N+LGQ+ +QP T
Sbjct: 765 APQNFMGTRPPPGVPGQAIGANAHGAPPAQQSHHVHRLVSNLMNQLGQATVAQP--STAP 822
Query: 166 EEVPSGP 172
+ +PS P
Sbjct: 823 QVLPSQP 829
>07_03_1058 +
23631819-23631943,23632032-23632101,23632196-23633368,
23633469-23634266
Length = 721
Score = 30.7 bits (66), Expect = 6.8
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 413 VLVGYTLYMSVIEDGREEGTHKRMLSPSTLSHETSRSPPRATHQFWVSASTRLGEGEATR 472
V + + + ++ R +G ++ +SP L + + TH+F S T GE +A R
Sbjct: 241 VALPFEFFRRIVLALRRQGMKEKYVSPVVLFYANKWVLSKKTHKFMASTDTGDGETDANR 300
Query: 473 VVTVL 477
T +
Sbjct: 301 RATAI 305
>06_03_0560 + 22174655-22174720,22175208-22175615,22176540-22177787
Length = 573
Score = 30.7 bits (66), Expect = 6.8
Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 23/143 (16%)
Query: 455 HQFWVSASTRLGEGEATRVVTVLPSDSVPARITSFSRNIVTPWKENISLSCNKVGVPAPA 514
HQFWV +GE T V L + FS W + + + +PA
Sbjct: 430 HQFWVGLDLGSLDGEITAVANSLSKQYIVGTAYIFS------WMSSYKMQ-RPTAMGSPA 482
Query: 515 TTWTMNGVGLESTLRKNVSSDGTLTISMTQSADSGNYTCSVENIHGRDEVTYTVEVKVPP 574
N VG+ TL ++ TL +++T G+ H E YT E ++PP
Sbjct: 483 -----NVVGVFVTLEVHL----TLQVAITLPESGGDEG----ECH---ECEYTCEKQLPP 526
Query: 575 QPPILAVVDSYADSLHLQWSDQG 597
PP+L S L + +G
Sbjct: 527 APPLLEASGHDGSSYRLNAAYEG 549
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 30.3 bits (65), Expect = 8.9
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 8/130 (6%)
Query: 439 PSTLSHETSRSPPRA-----THQFWVSASTRLGEGEATRVVTVLPSDSVPARITSFSRNI 493
PS ++++ S +PP A + + G G + V + S++ PA + F+ I
Sbjct: 447 PSPVNNQFSPNPPNAFPSASANNPFAPKQPSTGFGSISSVFNSISSNTAPASSSPFAPTI 506
Query: 494 VTPW--KENISLSCNKVGVPAPATTWTMNGVGLESTLRKNVSSDG-TLTISMTQSADSGN 550
P+ + N S N P+ T N T ++V G + +I S S
Sbjct: 507 SNPFPTQTNCSQFVNSASSPSLFGTINQNSFSTSGTNSQSVGLFGPSPSIVQQPSQASSG 566
Query: 551 YTCSVENIHG 560
+T S + G
Sbjct: 567 FTSSFPSFSG 576
>07_01_0715 +
5463705-5463853,5463934-5464287,5464849-5464932,
5465170-5465270,5465603-5465665,5466198-5466287,
5466390-5466479,5467135-5467289,5467729-5467755
Length = 370
Score = 30.3 bits (65), Expect = 8.9
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 477 LPSDSVPARITSFSRNIVTPWKENISL-SCNKVGVPAPATTWTMNGVGLESTLRKNVSS- 534
L S S+ A IT + +T EN + S K GVPA T+ G + + +SS
Sbjct: 248 LQSSSLVAAITQTMFSTITTDTENSGIASATKTGVPASTVLQTLIGTMISPGKKSGISSV 307
Query: 535 --DGTLTISMTQSADSGNYTCS--VENIHGRDEV 564
GT S + + NY C H R+EV
Sbjct: 308 TNAGTDMHSSQEDCHTENY-CQGFTPRKHPREEV 340
>07_01_0712 -
5381641-5381667,5382107-5382261,5382917-5383006,
5383109-5383198,5383731-5383793,5384126-5384226,
5384464-5384547,5385109-5385462,5385543-5385691
Length = 370
Score = 30.3 bits (65), Expect = 8.9
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 477 LPSDSVPARITSFSRNIVTPWKENISL-SCNKVGVPAPATTWTMNGVGLESTLRKNVSS- 534
L S S+ A IT + +T EN + S K GVPA T+ G + + +SS
Sbjct: 248 LQSSSLVAAITQTMFSTITTDTENSGIASATKTGVPASTVLQTLIGTMISPGKKSGISSV 307
Query: 535 --DGTLTISMTQSADSGNYTCS--VENIHGRDEV 564
GT S + + NY C H R+EV
Sbjct: 308 TNAGTDMHSSQEDCHTENY-CQGFTPRKHPREEV 340
>02_01_0102 -
749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 30.3 bits (65), Expect = 8.9
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 130 ASVQNLQPATSYHLRIIAENRLGQSEPSQPVQVTTTEEVPSGPPQDVRVEAKSSTELIVT 189
A Q + S HL+ AE + Q +PS Q + PS PPQ V + SS ++
Sbjct: 163 AQAQMFKRQQSEHLQQ-AEKQAEQGQPSNSEQRSGDMRPPSMPPQGVPGQQLSSAGMVRP 221
Query: 190 WEPPQ 194
+P Q
Sbjct: 222 MQPMQ 226
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.129 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,898,860
Number of Sequences: 37544
Number of extensions: 1416001
Number of successful extensions: 2485
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2478
Number of HSP's gapped (non-prelim): 12
length of query: 1104
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1014
effective length of database: 11,414,388
effective search space: 11574189432
effective search space used: 11574189432
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 65 (30.3 bits)
- SilkBase 1999-2023 -