GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001924-TA|BGIBMGA001924-PA|IPR003961|Fibronectin, type
III, IPR013098|Immunoglobulin I-set, IPR008957|Fibronectin, type
III-like fold, IPR003962|Fibronectin, type III subdomain,
IPR003599|Immunoglobulin subtype, IPR003598|Immunoglobulin subtype 2,
IPR007110|Immunoglobulin-like
         (1104 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    36   0.15 
At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contai...    33   1.4  
At5g61420.2 68418.m07707 myb family transcription factor (MYB28)...    32   1.8  
At5g61420.1 68418.m07706 myb family transcription factor (MYB28)...    32   1.8  
At4g00820.1 68417.m00113 calmodulin-binding protein-related cont...    31   3.2  
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family...    31   3.2  
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    31   5.6  
At4g18880.1 68417.m02784 heat shock transcription factor 21 (HSF...    30   7.4  

>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 35.9 bits (79), Expect = 0.15
 Identities = 23/105 (21%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 64  SLSHQVPEMPKNIRVIDQQSRTIQISWTQPYAGN-SPIINYIVQYKEAPESWPSTPQKVI 122
           S+S Q  +M   +  I  +S T+++   +P +   + I  + +  +++ +   S+    +
Sbjct: 288 SVSGQGDKMTVRVEEIQARSVTVRVDSEEPSSSTQNKITGFRLFCRKSKDEECSSQGNCV 347

Query: 123 VPGSVTSASVQNLQPATSYHLRIIAENRLGQSEPSQPVQVTTTEE 167
           V    T++++Q L+P T + LR+++ N  G  + S+ ++ TT ++
Sbjct: 348 VYLPETTSAIQGLEPDTEFCLRVVSFNEEGDLDESE-LRFTTLKD 391


>At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contains
           weak similarity to Ubiquitin-protein ligase E3 Mdm2 (EC
           6.3.2.-) (p53-binding protein Mdm2) (Oncoprotein Mdm2)
           (Double minute 2 protein) (Swiss-Prot:P23804) [Mus
           musculus]
          Length = 785

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 498 KENISLSCNKVGVPAPATTWTMNGVGLESTLRKNVSSDGTLTISMTQSADS 548
           ++++S S +++  P+PA +W+    G+ ST   N+ S  TL + M++  DS
Sbjct: 658 RDDLSQSSSQIFAPSPAGSWSSLDTGVTSTPTHNLHS--TLQLEMSELRDS 706


>At5g61420.2 68418.m07707 myb family transcription factor (MYB28)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 366

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 37/176 (21%), Positives = 83/176 (47%), Gaps = 14/176 (7%)

Query: 390 IKAAVSSRNKILVSWLPPSSPNGVLVGYTLYMS--VIEDGREEGTHKRMLSPSTLSHETS 447
           + A+  ++  ++   LP  + N +   +  ++   ++E G +  THK + S S  + + +
Sbjct: 81  LHASRGNKWSVIARHLPRRTDNEIKNYWNTHLKKRLMEQGIDPVTHKPLASSSNPTVDEN 140

Query: 448 RSPPRATHQFWVSASTRLGEGEATRVVTVLPSDS--VPARITSFSRNIVTPWKENISLSC 505
            + P A+     S+  +     +   ++  P  S  + ++++  S N  TP + + SLSC
Sbjct: 141 LNSPNAS-----SSDKQYSRSSSMPFLSRPPPSSCNMVSKVSELSSNDGTPIQGS-SLSC 194

Query: 506 NKVGVPAPATTWTMNGVGLESTLRKNV---SSDGTLTISMTQSADSGN-YTCSVEN 557
            K    + +T+  +N V  ++T  K++   S +G+L+ +    A   N +T  + N
Sbjct: 195 KKRFKKSSSTSRLLNKVAAKATSIKDILSASMEGSLSATTISHASFFNGFTEQIRN 250


>At5g61420.1 68418.m07706 myb family transcription factor (MYB28)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 287

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 37/176 (21%), Positives = 83/176 (47%), Gaps = 14/176 (7%)

Query: 390 IKAAVSSRNKILVSWLPPSSPNGVLVGYTLYMS--VIEDGREEGTHKRMLSPSTLSHETS 447
           + A+  ++  ++   LP  + N +   +  ++   ++E G +  THK + S S  + + +
Sbjct: 2   LHASRGNKWSVIARHLPRRTDNEIKNYWNTHLKKRLMEQGIDPVTHKPLASSSNPTVDEN 61

Query: 448 RSPPRATHQFWVSASTRLGEGEATRVVTVLPSDS--VPARITSFSRNIVTPWKENISLSC 505
            + P A+     S+  +     +   ++  P  S  + ++++  S N  TP + + SLSC
Sbjct: 62  LNSPNAS-----SSDKQYSRSSSMPFLSRPPPSSCNMVSKVSELSSNDGTPIQGS-SLSC 115

Query: 506 NKVGVPAPATTWTMNGVGLESTLRKNV---SSDGTLTISMTQSADSGN-YTCSVEN 557
            K    + +T+  +N V  ++T  K++   S +G+L+ +    A   N +T  + N
Sbjct: 116 KKRFKKSSSTSRLLNKVAAKATSIKDILSASMEGSLSATTISHASFFNGFTEQIRN 171


>At4g00820.1 68417.m00113 calmodulin-binding protein-related
           contains Pfam profile PF00612: IQ calmodulin-binding
           motif
          Length = 534

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 15/130 (11%)

Query: 446 TSRSPP-RATHQFWVSASTRLGEGEATRVVTVLPS-----DSVPARITSFS---RNIVTP 496
           TS +P  R+ + F   +   +     T     LP+     +S  ARI S S   +   TP
Sbjct: 398 TSNTPSLRSNYSFTARSGYSVCTTTTTATNAALPNYMAITESAKARIRSQSAPRQRPSTP 457

Query: 497 WKENISLSCNKVGVPAPATTWTMNGVGLESTLRKNVSSDGTLTISMTQSADSGNY-TCSV 555
            KE IS +  ++  P P     M+G  L S   K++   G+   ++ Q +   NY +C  
Sbjct: 458 EKERISSARKRLSFPVPPLPQQMDGQSLRSPSFKSIG--GSQLGALEQQS---NYSSCCT 512

Query: 556 ENIHGRDEVT 565
           E++ G  E++
Sbjct: 513 ESLGGGGEIS 522


>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
           protein similar to Mrs16p (GI:2737884) [Saccharomyces
           cerevisiae]; weak similarity to ataxin-2 related protein
           (GI:1679686) [Homo sapiens]
          Length = 595

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 93  PYAGNSPIINYIVQYKEAPESWPSTPQKVIVPGSVTSASVQNLQ-PATSYHL 143
           PY GN P + Y  Q    P   P  PQ+ ++PG      +   Q P   Y++
Sbjct: 527 PYPGNQPQMMYHPQAYYHPNGQPQYPQQQMIPGQQQQQMIPGQQHPRPVYYM 578


>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 850 QHPPPQHHYKHASNEYIEDICP-----Y-ATFQLTKPTAYSESSYSGNVYSGPYH 898
           QHP P   Y + +N+Y  D+ P     Y +   L  PT  S+S Y       PYH
Sbjct: 212 QHPLPPRFYDNPTNDYPADVPPPPPSSYPSNDHLPPPTGPSDSPYPHPYSHQPYH 266


>At4g18880.1 68417.m02784 heat shock transcription factor 21 (HSF21)
           identical to heat shock transcription factor 21
           [Arabidopsis thaliana] GI:3399765; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 401

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 148 ENRLGQSEPSQPVQVTTTEEVPSGPPQDVRVEAKSSTELIVTWEPPQ--RDL 197
           EN  G S  S P  +T T E+      D  V    S +  + W PP+  RDL
Sbjct: 3   ENNHGVSSSSLPPFLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDL 54


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.129    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,285,043
Number of Sequences: 28952
Number of extensions: 1068139
Number of successful extensions: 1972
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1970
Number of HSP's gapped (non-prelim): 9
length of query: 1104
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1015
effective length of database: 9,493,832
effective search space: 9636239480
effective search space used: 9636239480
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 64 (29.9 bits)