Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001923-TA|BGIBMGA001923-PA|IPR013098|Immunoglobulin
I-set, IPR013151|Immunoglobulin, IPR003599|Immunoglobulin subtype,
IPR003598|Immunoglobulin subtype 2, IPR007110|Immunoglobulin-like
         (366 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...   218   4e-59

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score =  218 bits (533), Expect = 4e-59
 Identities = 123/365 (33%), Positives = 194/365 (53%), Gaps = 16/365 (4%)

Query: 3   WLQSDNTPVASLSGLRQILKNGSLEILPFTAELYRHDVHATVYRCRMRSSVGYIAMSKNI 62
           W++SD T V  + GLRQ+L NG+L   PF AE YR +VHA VY C  ++SVG +  S+++
Sbjct: 57  WVRSDGTAVGDVPGLRQVLANGNLVFPPFRAEDYRQEVHAQVYVCLAKNSVGSV-HSRDV 115

Query: 63  HVYAALSSPWEVHVPDEYVIAGNAVVLRCVVPPHCADRISSTEWLNDDDINVLHYLG--S 120
           +V A ++  +E  V  EYVI GN  VL+C +P   AD +    W+  D     H     S
Sbjct: 116 NVRAVVNQYYEAEVVSEYVIRGNTAVLKCNIPSFVADFVRVEAWVGSDGSLYNHTANYDS 175

Query: 121 KYHRLDDGSLYISAVSTSDRHNRFLCRVRDKITGIRTAVNTLVSHVIVTEPKGGVKPRVS 180
           KY  L  G L+I  V   D +  + CR + ++TG  T ++     +++TEP G   P  S
Sbjct: 176 KYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTG-ETRLSATKGRLVITEPVGTKAPAFS 234

Query: 181 VEQR--SRRIRVGQDVRLPCAVHAWPVPTYRWFFEHHEQLTPIEETTLWKRARLLDEGLL 238
            + +    +    Q+V L C    +P P++RW ++  E  T  +  TL  R + +  G L
Sbjct: 235 TDIKVLGYQRHSKQNVALLCPAQGFPSPSFRW-YKFVEGTTRKQAVTLNDRVKQV-AGTL 292

Query: 239 SIQKVRREDAGRFVCWLNNTVGSESVHFTLIVTEPISVRTKPEVLRSKPKSDIALDCKVN 298
            I++ + ED+G+++C +NN+VG ESV   L VT P+  + +P+V            C   
Sbjct: 293 IIREAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLKAKIEPQVQTIDFGRPATFTCNFE 352

Query: 299 GHPIELVYWLHNGRTLEPNERIEILEDGLRLHIKNTHKDDQGIYQCFASNARDQAYGMSE 358
           G+PI+ + WL +G  ++ NE +        L I++  K+D+G+YQCF  N ++ A   +E
Sbjct: 353 GNPIKTISWLKDGHPIDHNEAV--------LRIESVRKEDKGMYQCFIRNDQESAEATAE 404

Query: 359 YLFDG 363
               G
Sbjct: 405 LKLGG 409



 Score = 60.5 bits (140), Expect = 2e-11
 Identities = 60/231 (25%), Positives = 101/231 (43%), Gaps = 35/231 (15%)

Query: 128 GSLYISAVSTSDRHNRFLCRVRDKITGIRTAVNTLVSHVIVTEPKGGVKPRVSVEQRSRR 187
           G+L I      D   ++LC V + + G   +V T+++   VT P      +  +E + + 
Sbjct: 290 GTLIIREAKVEDS-GKYLCVVNNSVGG--ESVETVLT---VTAPL-----KAKIEPQVQT 338

Query: 188 IRVGQDVRLPCAVHAWPVPTYRWFFEHHEQLTPIEETTLWKRARLLDEGLLSIQKVRRED 247
           I  G+     C     P+ T  W  + H    PI+           +E +L I+ VR+ED
Sbjct: 339 IDFGRPATFTCNFEGNPIKTISWLKDGH----PIDH----------NEAVLRIESVRKED 384

Query: 248 AGRFVCWLNNTVGSESVHFTLIVT---EPISVRTKPEVLRSKPKSDIALDCKVNGHPIEL 304
            G + C++ N   S      L +    EP  +R        +P + + L C  +G+P   
Sbjct: 385 KGMYQCFIRNDQESAEATAELKLGGRFEPPQIRHAFNEETVQPGNSVFLKCIASGNPTPE 444

Query: 305 VYWLHNGRTLEPNERIEILE----DG---LRLHIKNTHKDDQGIYQCFASN 348
           + W   GR L  +ER +I +    +G     L+I   H +D G+Y+C AS+
Sbjct: 445 ITWELYGRRLSNSERNQIGQYVTVNGDVVSHLNITAIHTNDGGLYRCVASS 495



 Score = 55.6 bits (128), Expect = 5e-10
 Identities = 78/321 (24%), Positives = 122/321 (38%), Gaps = 33/321 (10%)

Query: 38  HDVHATVYRCRMRSSVGYIAMSKNIHVYAALSSPWEVHVPDEYVIAGNAVVLRCVVPPHC 97
           H     +YRC   S VG    S  I+VY     P+   +  + ++AG  +++ C   P  
Sbjct: 482 HTNDGGLYRCVASSKVGSADHSARINVYGL---PFVRSMEKQAIVAGGTLIVHC---PFA 535

Query: 98  ADRISSTEWLNDDDINVLHYLGSKYHRLDDGSLYISAVSTSDRHNRFLCRVRDKITGIRT 157
              + S  W  D     ++    K     +G+L I  V  +     + C  ++   G  +
Sbjct: 536 GHPVDSVVWERDGRQLPIN---RKQKVFINGTLIIENVERASDQATYDCVAKNS-QGY-S 590

Query: 158 AVNTLVSHVIVTEPKGGVKPRVSVEQRSRRIRVGQDVRLPCAVHAWPVP-TYRWFFEHH- 215
           A  +L   V+V  P+  + P    E     I  G  V + C V     P    W    H 
Sbjct: 591 ARGSLEVQVMVP-PQ--ILPFDFGEDS---INEGDGVSVQCTVSKGDYPLNISWTLNGHF 644

Query: 216 -EQLTPIEETTLWKRARLLDEGLLSIQKVRREDAGRFVCWLNNTVGSESVHFTLIVTEPI 274
            +Q   I      KR        LSI  V+    G + C  +N+    +   +L +  P 
Sbjct: 645 IDQTNGIVINRASKRV-----STLSIDNVQSTHVGNYTCLASNSASVTTYTTSLFINVPP 699

Query: 275 SVRTKPEVLRSKPKSDIALDCKVNGHPIELVYWLH-------NGRTLEPNERIEILEDGL 327
               +P        SD A++CK +G P  +V W         + +  +PN     +EDG 
Sbjct: 700 RWILEPTDKAFAQGSDAAVECKADGFPRPVVTWKRATGVSPGDYKDFKPNNPDIKVEDG- 758

Query: 328 RLHIKNTHKDDQGIYQCFASN 348
            L I N  K ++G Y C A N
Sbjct: 759 TLTINNIQKTNEGYYLCEAVN 779



 Score = 54.8 bits (126), Expect = 9e-10
 Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 9/184 (4%)

Query: 175 VKPRVSVEQRSRRIRVGQDVRLPCAVHAWPVPTYRWFFEHHEQLTPIEETTLWKRARLLD 234
           V PR  +E   +    G D  + C    +P P   W           ++         ++
Sbjct: 697 VPPRWILEPTDKAFAQGSDAAVECKADGFPRPVVTWKRATGVSPGDYKDFKPNNPDIKVE 756

Query: 235 EGLLSIQKVRREDAGRFVCWLNNTVGSE-SVHFTLIVTEPISVRTKPEVLRSKPKSDIAL 293
           +G L+I  +++ + G ++C   N +GS  S    + V  P     K     S+      L
Sbjct: 757 DGTLTINNIQKTNEGYYLCEAVNGIGSGLSAVIQISVQAPPQFDIKLRNQTSRRGDPAVL 816

Query: 294 DCKVNGHPIELVYWLHNGRTLEPNE------RIEILEDGLR--LHIKNTHKDDQGIYQCF 345
            C+  G     + W  N + LEP        R EIL +G+   L IK T + D  ++ C 
Sbjct: 817 QCEAKGEKPIGILWNINNKRLEPKGDNRYTIREEILANGVLSGLSIKRTERSDSALFTCV 876

Query: 346 ASNA 349
           A+NA
Sbjct: 877 ATNA 880



 Score = 52.4 bits (120), Expect = 5e-09
 Identities = 41/177 (23%), Positives = 72/177 (40%), Gaps = 6/177 (3%)

Query: 177 PRVSVEQRSRRIRVGQDVRLPCAVHAWPVPTYRWFFEHHEQLTPIEETTLWKRARLLDEG 236
           P++        ++ G  V L C     P P   W   +  +L+  E   + +   +  + 
Sbjct: 414 PQIRHAFNEETVQPGNSVFLKCIASGNPTPEITWEL-YGRRLSNSERNQIGQYVTVNGDV 472

Query: 237 L--LSIQKVRREDAGRFVCWLNNTVGSESVHFTLIVTEPISVRTKPEVLRSKPKSDIALD 294
           +  L+I  +   D G + C  ++ VGS   H   I    +      E         + + 
Sbjct: 473 VSHLNITAIHTNDGGLYRCVASSKVGSAD-HSARINVYGLPFVRSMEKQAIVAGGTLIVH 531

Query: 295 CKVNGHPIELVYWLHNGRTLEPNERIEILEDGLRLHIKNTHK-DDQGIYQCFASNAR 350
           C   GHP++ V W  +GR L  N + ++  +G  L I+N  +  DQ  Y C A N++
Sbjct: 532 CPFAGHPVDSVVWERDGRQLPINRKQKVFING-TLIIENVERASDQATYDCVAKNSQ 587



 Score = 45.6 bits (103), Expect = 6e-07
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 152  ITGIRTAVNTLVSHVIVTEPKGGVKPRVSVEQRSRRIRVGQDVRLPCAVHAWPVPTYRWF 211
            +T   T      S  +   P   V  +++    +      +DV LPC     P P   W 
Sbjct: 1282 VTAATTIGEGQPSKKVTVSPSASVPAKIASFDDTFTTTYKEDVTLPCLAVGLPPPVITW- 1340

Query: 212  FEHHEQLTPIEETTLWKRARLLDEGLLSIQKVRREDAGRFVCWLNNTVGSESVHFTLIVT 271
                 ++  ++ TT  K  R   +G L I+ V R +AG + C + N  G +SV   LIV 
Sbjct: 1341 -----KIKGVQFTTSDK-IRQQPDGSLFIRDVSRNNAGEYSCHVENDYGQDSVTHQLIVN 1394

Query: 272  EP 273
             P
Sbjct: 1395 AP 1396



 Score = 43.2 bits (97), Expect = 3e-06
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 14/169 (8%)

Query: 124 RLDDGSLYISAVSTSDRHNRFLCRVRDKITGIRTAVNTLVSHVIVTEPKGGVKPRVSVEQ 183
           +++DG+L I+ +  ++    +LC   + + GI + ++ ++   +   P+  +K R    Q
Sbjct: 754 KVEDGTLTINNIQKTNE-GYYLC---EAVNGIGSGLSAVIQISVQAPPQFDIKLR---NQ 806

Query: 184 RSRRIRVGQDVRLPCAVHAWPVPTYRWFFEHHEQLTPIEETTLWKRARLLDEGLLS---I 240
            SRR   G    L C           W   ++++L P  +     R  +L  G+LS   I
Sbjct: 807 TSRR---GDPAVLQCEAKGEKPIGILWNI-NNKRLEPKGDNRYTIREEILANGVLSGLSI 862

Query: 241 QKVRREDAGRFVCWLNNTVGSESVHFTLIVTEPISVRTKPEVLRSKPKS 289
           ++  R D+  F C   N  GS+     +IV E   V    +VL    +S
Sbjct: 863 KRTERSDSALFTCVATNAFGSDDTSINMIVQEVPEVPYGLKVLDKSGRS 911



 Score = 35.5 bits (78), Expect = 6e-04
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 261  SESVHFTLIVTEPISVRTKPEVLRSKPKSDIALDCKVNGHPIELVYWLHNGRTLEPNERI 320
            S+ V  +   + P  + +  +   +  K D+ L C   G P  ++ W   G     +++I
Sbjct: 1294 SKKVTVSPSASVPAKIASFDDTFTTTYKEDVTLPCLAVGLPPPVITWKIKGVQFTTSDKI 1353

Query: 321  EILEDGLRLHIKNTHKDDQGIYQCFASN 348
                DG  L I++  +++ G Y C   N
Sbjct: 1354 RQQPDG-SLFIRDVSRNNAGEYSCHVEN 1380



 Score = 27.1 bits (57), Expect = 0.21
 Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 18/164 (10%)

Query: 194 VRLPCAVHAWPVPTYRWFFEHHEQLTPIEETTLWKRARLLDEGLLSIQKVRR-EDAGRFV 252
           V  P A H  PV +  W  E   +  PI      ++ ++   G L I+ V R  D   + 
Sbjct: 530 VHCPFAGH--PVDSVVW--ERDGRQLPIN-----RKQKVFINGTLIIENVERASDQATYD 580

Query: 253 CWLNNTVGSESVHFTLIVTEPISVRTKPEVLRSKPKSD---IALDCKVNGHPIEL-VYWL 308
           C   N+ G  S   +L V   +  +  P        ++   +++ C V+     L + W 
Sbjct: 581 CVAKNSQGY-SARGSLEVQVMVPPQILPFDFGEDSINEGDGVSVQCTVSKGDYPLNISWT 639

Query: 309 HNGRTLEPNERIEILEDGLR---LHIKNTHKDDQGIYQCFASNA 349
            NG  ++    I I     R   L I N      G Y C ASN+
Sbjct: 640 LNGHFIDQTNGIVINRASKRVSTLSIDNVQSTHVGNYTCLASNS 683



 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 273 PISVRTKPEVLRSKPKSDIALDCKVNGHPIELVYWLHNGRT 313
           P+ VR  P  +     +   ++C  +G+P   + W+ +  T
Sbjct: 23  PVFVREPPNRIDFSNTTGAVVECSAHGNPTPDIIWVRSDGT 63


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,056
Number of Sequences: 317
Number of extensions: 3658
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 11
length of query: 366
length of database: 114,650
effective HSP length: 58
effective length of query: 308
effective length of database: 96,264
effective search space: 29649312
effective search space used: 29649312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)