Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001923-TA|BGIBMGA001923-PA|IPR013098|Immunoglobulin
I-set, IPR013151|Immunoglobulin, IPR003599|Immunoglobulin subtype,
IPR003598|Immunoglobulin subtype 2, IPR007110|Immunoglobulin-like
         (366 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00040.1 68417.m05682 chalcone and stilbene synthase family p...    32   0.70 
At5g25430.1 68418.m03019 anion exchange protein family contains ...    29   4.9  
At4g00420.2 68417.m00058 double-stranded RNA-binding domain (DsR...    29   4.9  
At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative si...    29   6.5  

>At4g00040.1 68417.m05682 chalcone and stilbene synthase family
           protein similar to chalcone synthase homolog PrChS1,
           Pinus radiata, gb:U90341; similar to anther-specific
           protein [Nicotiana sylvestris][GI:2326774], YY2 protein
           [Oryza sativa][GI:2645170]
          Length = 385

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 55  YIAMSKN-IHVYAALSSPWEVHVPDEYVIAGNAVVLRCVVPPHCADRISSTEWLND-DDI 112
           Y  MS+  +H Y  L++     +     IA +AVV       + A  +   EW    +DI
Sbjct: 70  YTVMSRETLHKYPELATEGSPTIKQRLEIANDAVVQMA----YEASLVCIKEWGRAVEDI 125

Query: 113 NVLHYLGSKYHRLDDGSLYISA 134
             L Y+ S   RL  G LY+SA
Sbjct: 126 THLVYVSSSEFRLPGGDLYLSA 147


>At5g25430.1 68418.m03019 anion exchange protein family contains
           similarity to SWISS-PROT:P02730 anion transport protein
           (Anion exchange protein 1) [Human]{Homo sapiens}
          Length = 641

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 237 LLSIQKVRREDAGRF-VCWLNNTVGSESVHFTLIVTEPISVRTKPEVLRSKPKSDIALDC 295
           L++  K RR  + ++   WL + +G   V   +++   +S     EVL S P+    L C
Sbjct: 184 LITALKSRRAKSWKYGFGWLRSFIGDYGVPLMVLLWTALSYTVPSEVLPSVPR---RLFC 240

Query: 296 KVNGHPIELVYW 307
            +   P  L +W
Sbjct: 241 PLPWEPASLYHW 252


>At4g00420.2 68417.m00058 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 190

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 160 NTLVSHVIVTEPKGGVKPRVS---VEQRSRRIRVGQDVRLPCAVHAWPVPTYRWFFE 213
           N  + + +V+EP+  ++P  +    E+ ++R      +   C+V  W  P Y +  E
Sbjct: 52  NFTLENTLVSEPEADLRPHTTEPTTEEETQRSSAKSQLYNLCSVRHWKAPLYEYIAE 108


>At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase, Zea mays,
           PIR2:JQ1329; contains non-consensus (GC) donor splice
           site at intron 4
          Length = 1050

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 298 NGHPIELVYWLHNGRTLEPNERIEILEDGLRLHIKNTH 335
           NG P+++V  L+NG  ++P+++ + + D L   + N H
Sbjct: 627 NGGPVDIVKALNNGLLVDPHDQ-QAISDALLKLVANKH 663


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,055,072
Number of Sequences: 28952
Number of extensions: 383746
Number of successful extensions: 825
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 825
Number of HSP's gapped (non-prelim): 4
length of query: 366
length of database: 12,070,560
effective HSP length: 82
effective length of query: 284
effective length of database: 9,696,496
effective search space: 2753804864
effective search space used: 2753804864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)