GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001923-TA|BGIBMGA001923-PA|IPR013098|Immunoglobulin
I-set, IPR013151|Immunoglobulin, IPR003599|Immunoglobulin subtype,
IPR003598|Immunoglobulin subtype 2, IPR007110|Immunoglobulin-like
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    30   0.45 
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc...    29   1.4  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    28   2.4  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    27   4.2  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   4.2  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 30.3 bits (65), Expect = 0.45
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 323 LEDGLRLHIKNTHKDDQGIYQCFA--SNARDQAYGMSEY-LFD 362
           +++ L++HI+N    D  I+QC +  S A  QA+    Y LFD
Sbjct: 339 IKESLKIHIRNKSASDAAIFQCISLLSIALGQAFSNYAYDLFD 381


>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
          Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 50 RSSVGYIAMSKNI--HVYAALSSPWEVHVPDEYVI 82
          R+ VGY+ +++N   ++Y  ++ P  VH+ D Y+I
Sbjct: 61 RARVGYVILNRNSPENLYLFINHPSNVHLVDRYLI 95


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 269 IVTEPISVRTKPEVLRSKPKSDIALDCKVNGHPIELVYWLHNGRTLEPNERIEILE 324
           ++ + ++  TKPE+++    +DI L      +P+ L   L  G T  P E  +IL+
Sbjct: 191 VMEKMLNACTKPEMMQFNDGNDIPL----RSNPVSLWKSLPEGETFTPQEAAKILK 242


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 7   DNTPVASLSGLRQILKNGSLEILPFTAELYRHDVHATVYR 46
           DN  + +++GLR I+ +  L++L +    YR  + A V +
Sbjct: 459 DNINIPTVTGLRNIISDVLLDVLLYCQPNYRDKILAAVVK 498


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 18  RQILKNGSLEILPFTAELYRHDVHATVYRCRMRSSV 53
           R+ LKNG L ++P+T  L+ +D    V R R +SS+
Sbjct: 465 REFLKNGQLHLIPYTLILF-NDRICLVQR-RSKSSI 498


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,739,627
Number of Sequences: 5004
Number of extensions: 73075
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 6
length of query: 366
length of database: 2,362,478
effective HSP length: 74
effective length of query: 292
effective length of database: 1,992,182
effective search space: 581717144
effective search space used: 581717144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)