GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001923-TA|BGIBMGA001923-PA|IPR013098|Immunoglobulin
I-set, IPR013151|Immunoglobulin, IPR003599|Immunoglobulin subtype,
IPR003598|Immunoglobulin subtype 2, IPR007110|Immunoglobulin-like
         (366 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321...    31   1.5  
12_01_1105 + 11672118-11673245                                         29   4.5  
12_02_0412 - 18799217-18801061                                         29   5.9  
05_04_0278 - 19694590-19694757,19696331-19696391,19696503-196966...    29   7.8  

>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
            16032434-16032715,16032790-16032948,16033034-16033390,
            16033482-16033622,16033919-16034045,16034121-16034263,
            16034740-16034917,16035019-16035552,16035628-16035812,
            16036551-16036637,16036710-16036850,16036896-16037175,
            16037944-16038020,16038326-16039138,16039292-16039801,
            16039926-16040056,16040192-16040246,16040364-16040564,
            16040640-16040909,16041103-16041184,16041271-16041434,
            16041532-16041690,16041762-16042083,16042158-16042544,
            16042811-16042999,16043233-16043317,16043458-16043753,
            16043862-16043965,16044484-16044513,16044602-16044817,
            16044923-16045540,16045718-16045993,16046619-16046762,
            16046854-16046962,16047291-16047475,16047557-16047670,
            16048348-16048479,16048929-16049249,16049424-16049891,
            16054482-16054547,16054691-16054828,16054917-16055015,
            16057098-16057194,16057661-16057761,16057858-16058085,
            16059175-16059381,16059451-16059571,16059921-16059988,
            16060148-16060213,16060396-16060509,16060949-16061300,
            16063571-16063663,16063764-16063922,16064224-16064287,
            16064385-16064577,16064673-16064710,16065510-16065645,
            16065726-16065914,16065994-16066095,16067660-16067777,
            16067861-16067964,16070338-16070346,16071428-16071475,
            16071581-16071676,16072430-16072533,16073964-16074045,
            16076573-16076601,16076708-16076963
          Length = 4246

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 72   WEVHVPDEYVIAGNAVVLRCVVPPHCADRISST 104
            W    P  YVI G+ V  RCV P      +S+T
Sbjct: 2174 WRPQAPSNYVILGDCVSSRCVPPSQVVVAVSNT 2206


>12_01_1105 + 11672118-11673245
          Length = 375

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 307 WLHNGRTLEPNERIEILEDGLRLHIKNTHKDDQGI-YQCFASNARDQA 353
           W+      +P ERI   ++ + +H K     D GI Y C  +N  D A
Sbjct: 299 WVETQEEEDPEERIFETQEHITVHPKTCEDHDDGIPYSCPTTNTMDIA 346


>12_02_0412 - 18799217-18801061
          Length = 614

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 208 YRWFFEHHEQLTPIEETTLWKRARLLDEGLLSIQKVRREDAGRFVCWLNNTVGSESVHFT 267
           +RW  E    +   E+ TLW+ A      L++ Q ++  +AG  V      V    + F 
Sbjct: 122 WRWIAERFIPVLKQEQVTLWETAESYFNELVNRQLIQPVEAGDVV---KVKVHDVVLEFI 178

Query: 268 LIVTEPISVRTKPEVLRSKPKSDIALDCKVN 298
             V    +  T   VLR KP+ DI     +N
Sbjct: 179 ASVAAEENFVTSDMVLRCKPR-DIVRRASLN 208


>05_04_0278 -
           19694590-19694757,19696331-19696391,19696503-19696658,
           19696740-19696912,19698199-19698276,19698399-19698575,
           19698924-19699001,19700573-19700692,19700803-19701183
          Length = 463

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 334 THKDDQGIYQCFASNARDQAYGM 356
           TH D +G  +CF SN +DQA  M
Sbjct: 302 THIDSRGDGRCFISNGKDQAIKM 324


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,275,881
Number of Sequences: 37544
Number of extensions: 478527
Number of successful extensions: 912
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 910
Number of HSP's gapped (non-prelim): 4
length of query: 366
length of database: 14,793,348
effective HSP length: 83
effective length of query: 283
effective length of database: 11,677,196
effective search space: 3304646468
effective search space used: 3304646468
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)