GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001922-TA|BGIBMGA001922-PA|undefined
         (57 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   0.74 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   0.74 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    20   2.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    19   3.9  
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    18   6.9  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    18   9.1  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 0.74
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 8   NLGVEFASRTKFQLAQNKAAKSEGFMNLTIRRTLKQSPTSIKT 50
           +   E  +  K        +  + FM LT+ + LK+   + KT
Sbjct: 229 SFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQVLKEMAMTGKT 271


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 0.74
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 8   NLGVEFASRTKFQLAQNKAAKSEGFMNLTIRRTLKQSPTSIKT 50
           +   E  +  K        +  + FM LT+ + LK+   + KT
Sbjct: 229 SFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQVLKEMAMTGKT 271


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 19.8 bits (39), Expect = 2.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 8   NLGVEFASRTKFQLAQNKAAKS 29
           NLG++F  + KF++    + +S
Sbjct: 210 NLGLDFPYQGKFEVPTKSSPRS 231


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 42  KQSPTSIKTEEAQRKI 57
           ++SPTS K +EA  ++
Sbjct: 849 EKSPTSDKAQEADGEV 864


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative
          cytochrome P450 monooxigenase protein.
          Length = 124

 Score = 18.2 bits (35), Expect = 6.9
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 20 QLAQNKAAKSEGFMNLTIRRTLKQSPTSIKTEEAQR 55
          +L +  AA  +   N+T+++  +     +  +EAQR
Sbjct: 21 KLYEEVAAVIDNIENITMQQLQEMKYLEMVLKEAQR 56


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 17.8 bits (34), Expect = 9.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 39  RTLKQSPTSIKTEEAQRKI 57
           + LK+SPTS +  +  ++I
Sbjct: 483 KMLKESPTSEEIRQFTQEI 501


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.124    0.333 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,040
Number of Sequences: 317
Number of extensions: 232
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 57
length of database: 114,650
effective HSP length: 37
effective length of query: 20
effective length of database: 102,921
effective search space:  2058420
effective search space used:  2058420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)
S2: 34 (17.8 bits)