GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001922-TA|BGIBMGA001922-PA|undefined
         (57 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    25   0.91 
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    23   3.7  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   6.4  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    22   8.4  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    22   8.4  

>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 0.91
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 6   KHNLGVEFASRTKFQLAQNKAAKSEGFMNLTIRR 39
           K    +E ASRT+  LA +K     GF N+ I +
Sbjct: 195 KTKFAIENASRTRIVLADSKIHILGGFTNIRIAK 228


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 1   MTVCDKHNLGVEFASR 16
           M +CD+HN G+E   R
Sbjct: 109 MKLCDQHNNGIEIHRR 124


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 12  EFASRTKFQLAQNKAAKSEG 31
           EF  R K  + QNK   SEG
Sbjct: 274 EFEEREKSAIKQNKEQSSEG 293


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 18  KFQLAQNKAAKSEGFMNLTIRRTLK 42
           KFQL     +  E F N+T+R T K
Sbjct: 946 KFQLLSVDPSTLERFRNVTLRLTKK 970


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 326

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)

Query: 12 EFASRTKFQLAQNKAAKSEGFMN 34
          E++S +KF+   N+++ + GF N
Sbjct: 30 EYSSTSKFETLGNQSSTNLGFSN 52


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.124    0.333 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,234
Number of Sequences: 5004
Number of extensions: 4575
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 57
length of database: 2,362,478
effective HSP length: 38
effective length of query: 19
effective length of database: 2,172,326
effective search space: 41274194
effective search space used: 41274194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)