GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001922-TA|BGIBMGA001922-PA|undefined
         (57 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36)                  25   6.4  
SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)                25   8.5  
SB_4328| Best HMM Match : Vicilin_N (HMM E-Value=0.39)                 25   8.5  

>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 21   LAQNKAAKSEGFMNLTIRRTLKQSPTSIKTEEAQR 55
            L + K AK EG +NL  R T+     ++ T+  ++
Sbjct: 1408 LFERKEAKKEGLLNLEERETITNKRYAMITQSGEK 1442


>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 1  MTVCDKHNLGVEFASRTKFQLAQNK 25
          + V DKH LG   A++T+ +  QNK
Sbjct: 18 LKVIDKHKLGAAPATKTRQKQEQNK 42


>SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36)
          Length = 979

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 3   VCDKHNLGVEFASRTKFQLAQNKAAKSEGFMNLTIRRTLK 42
           V +  NLG  F    KF+    K  +S  + N  IRR  K
Sbjct: 769 VGEARNLGFWFDCNVKFEQHITKTCQSAFYSNFNIRRIRK 808


>SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)
          Length = 639

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 5   DKHNLGVEFASRTKFQLAQNKAAKS 29
           D H +  EF  R  F LA+N+ A+S
Sbjct: 247 DNHQVMDEFEWRMSFSLAENRLAQS 271


>SB_4328| Best HMM Match : Vicilin_N (HMM E-Value=0.39)
          Length = 738

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 5   DKHNLGVEFASRTKFQLAQNKAAKSEGFMNLTIRRTLKQSP-TSIKTEEA 53
           D HN  ++  +   + LA+  ++K EG  +L I  T  Q P T  K ++A
Sbjct: 378 DLHNKEIDALANDNYDLAEEISSKIEGLESL-IESTKYQLPFTDDKVQDA 426


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.124    0.333 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,473,721
Number of Sequences: 59808
Number of extensions: 31075
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 5
length of query: 57
length of database: 16,821,457
effective HSP length: 37
effective length of query: 20
effective length of database: 14,608,561
effective search space: 292171220
effective search space used: 292171220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)