GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001922-TA|BGIBMGA001922-PA|undefined
         (57 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21323-10|AAW30670.1|  805|Caenorhabditis elegans Hypothetical p...    27   1.6  
U21323-9|AAA62553.1|  971|Caenorhabditis elegans Hypothetical pr...    27   1.6  
AL161712-15|CAC70142.1|  169|Caenorhabditis elegans Hypothetical...    25   8.4  

>U21323-10|AAW30670.1|  805|Caenorhabditis elegans Hypothetical
           protein C45G9.10b protein.
          Length = 805

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/34 (26%), Positives = 21/34 (61%)

Query: 4   CDKHNLGVEFASRTKFQLAQNKAAKSEGFMNLTI 37
           C   ++  EFA++  +Q+ +N    S+G+ ++T+
Sbjct: 568 CSDLDVNREFANKFSYQVLENVCPDSKGYFDITV 601


>U21323-9|AAA62553.1|  971|Caenorhabditis elegans Hypothetical
           protein C45G9.10a protein.
          Length = 971

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/34 (26%), Positives = 21/34 (61%)

Query: 4   CDKHNLGVEFASRTKFQLAQNKAAKSEGFMNLTI 37
           C   ++  EFA++  +Q+ +N    S+G+ ++T+
Sbjct: 734 CSDLDVNREFANKFSYQVLENVCPDSKGYFDITV 767


>AL161712-15|CAC70142.1|  169|Caenorhabditis elegans Hypothetical
           protein Y66D12A.19 protein.
          Length = 169

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 28  KSEGFMNLTIRRTLKQSPTSIKTEEAQR 55
           + + F N+T+R  LK+ P S    +A R
Sbjct: 117 RRDSFRNVTVRLVLKEQPKSTLFPDAPR 144


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.124    0.333 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,106,185
Number of Sequences: 27539
Number of extensions: 25306
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 3
length of query: 57
length of database: 12,573,161
effective HSP length: 38
effective length of query: 19
effective length of database: 11,526,679
effective search space: 219006901
effective search space used: 219006901
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)