GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001922-TA|BGIBMGA001922-PA|undefined
         (57 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   0.39 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   4.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   6.3  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 0.39
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 34  NLTIRRTLKQSPTSIKTEE 52
           N  IRRTL  + TS+KT +
Sbjct: 157 NAHIRRTLHMNRTSLKTSK 175


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 1.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 16  RTKFQLAQNKAAKSEGFMN 34
           R+ F+L QN    +E F+N
Sbjct: 547 RSFFELLQNPKVSNEQFLN 565


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 6/16 (37%), Positives = 14/16 (87%)

Query: 41   LKQSPTSIKTEEAQRK 56
            +KQSP+S ++++ Q++
Sbjct: 1049 IKQSPSSNQSQQIQQQ 1064


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 3   VCDKHNLGVEFASRTK 18
           VCD  ++GV++   T+
Sbjct: 355 VCDACSMGVKYIPNTE 370


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.124    0.333 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,204
Number of Sequences: 429
Number of extensions: 205
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 57
length of database: 140,377
effective HSP length: 37
effective length of query: 20
effective length of database: 124,504
effective search space:  2490080
effective search space used:  2490080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)