GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001922-TA|BGIBMGA001922-PA|undefined
         (57 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64960.1 68414.m07363 expressed protein                             25   8.0  

>At1g64960.1 68414.m07363 expressed protein
          Length = 1168

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 20 QLAQNKAAKSEGFMNLTIRRTLKQSPTSIKT 50
          +L  +    SE F++  ++ TLK S  S+KT
Sbjct: 4  RLRSSLKTSSEEFLSSAVKLTLKSSKPSLKT 34


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.124    0.333 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,036,916
Number of Sequences: 28952
Number of extensions: 23284
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 1
length of query: 57
length of database: 12,070,560
effective HSP length: 38
effective length of query: 19
effective length of database: 10,970,384
effective search space: 208437296
effective search space used: 208437296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)