Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001921-TA|BGIBMGA001921-PA|IPR004000|Actin/actin-like
(418 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 418 e-117
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 255 6e-68
SB_56| Best HMM Match : Actin (HMM E-Value=0) 252 4e-67
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 251 7e-67
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 251 9e-67
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 198 5e-51
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 194 8e-50
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 2e-41
SB_54| Best HMM Match : Actin (HMM E-Value=0) 142 6e-34
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 131 1e-30
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 101 1e-21
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 96 4e-20
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 93 4e-19
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 91 2e-18
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 45 1e-04
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 40 0.005
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 36 0.046
SB_28140| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.00
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_15553| Best HMM Match : SCP (HMM E-Value=1.1e-16) 30 3.0
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.0
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 29 5.3
SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07) 29 7.0
SB_32741| Best HMM Match : Filament (HMM E-Value=0.39) 29 7.0
SB_29922| Best HMM Match : DUF1047 (HMM E-Value=7.3) 29 7.0
SB_5104| Best HMM Match : DUF1047 (HMM E-Value=7.3) 29 7.0
SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83) 29 9.3
SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7) 29 9.3
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 418 bits (1029), Expect = e-117
Identities = 208/301 (69%), Positives = 232/301 (77%), Gaps = 31/301 (10%)
Query: 142 AVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGRNIT 201
A +AVLALAASW SR ERT TG V+DSGDGVTH++PVAEGYVIGSCIKHIPIAGR+IT
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 99
Query: 202 SFIQSLLREREVGIPPEQSL--------------------------ETAKAIKEKYSYI- 234
F+Q LLRERE+GIPPEQS+ E AK IK KY I
Sbjct: 100 FFVQQLLREREMGIPPEQSMETAKTIKERWGYICPDIAKEFAKYEQEPAKWIK-KYESIN 158
Query: 235 ---CPDIAKEFAKYDSDPGKWMKKYTGINAITKNPFTVDVGYERFLGPEIFFHPEFSNAD 291
+ ++FAKY+ +P KW+KKY INA+TK PF+VDV YERFLGPEIFFHPEFSN D
Sbjct: 159 AVTTKILLRQFAKYEQEPAKWIKKYESINAVTKKPFSVDVAYERFLGPEIFFHPEFSNPD 218
Query: 292 FTVPLNEMVDEVIQSCPIDVRRGLYGNIVLSGGSTMFRDFGRRLQRDIKRAVDARLKLST 351
FT PL+E+VD VIQ+CPIDVRR LY NIVLSGGSTMFRDFGRRLQRDIKR VDARLK+S
Sbjct: 219 FTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSE 278
Query: 352 MLSEGRITPKPIDVQVVSHNMQRYAVWFGGSMLASTPEFYQVCHTKQAYMEYGPSICRHN 411
LS GRI PKPI+ QV+SH+MQRYAVWFGGSMLASTPEFY VCHTK Y E+GPSICRHN
Sbjct: 279 TLSGGRIKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHN 338
Query: 412 P 412
P
Sbjct: 339 P 339
Score = 56.0 bits (129), Expect = 5e-08
Identities = 26/41 (63%), Positives = 31/41 (75%)
Query: 35 IAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVK 75
IAIKE+AKVG++S R K VEDLDFFIGDEA + Y+ K
Sbjct: 2 IAIKESAKVGNKSLGRSAKGVEDLDFFIGDEAIDKPSYATK 42
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 255 bits (624), Expect = 6e-68
Identities = 149/408 (36%), Positives = 218/408 (53%), Gaps = 40/408 (9%)
Query: 1 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 60
M D + A V+D G+G K GFAG+ P+ + PS VG + + + D
Sbjct: 1 MEDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDS 52
Query: 61 FIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNT 119
++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 53 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 112
Query: 120 PENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVP 179
NRE + +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP
Sbjct: 113 KANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVP 164
Query: 180 VAEGYVIGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKYSYICPDIA 239
+ EGY + I + +AGR++T ++ +L ER E + IKEK +Y+ D
Sbjct: 165 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFE 224
Query: 240 KEFAKYDSDPGKWMKKYTGINAITKNPFTVDVGYERFLGPEIFFHPEFSNADFTVPLNEM 299
+E A + K Y + + +G ERF PE F P F + + ++E
Sbjct: 225 QEMATAAAS-SSLEKSYE-----LPDGQVITIGNERFRCPEAMFQPSFLGME-SAGIHET 277
Query: 300 VDEVIQSCPIDVRRGLYGNIVLSGGSTMFRDFGRRLQRDIKRAVDARLKLSTMLSEGRIT 359
I C +D+R+ LY N VLSGGSTMF R+Q++I +
Sbjct: 278 TYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEI----------------SALA 321
Query: 360 PKPIDVQVVSHNMQRYAVWFGGSMLASTPEFYQVCHTKQAYMEYGPSI 407
P + +++++ ++Y+VW GGS+LAS F Q+ +KQ Y E GPSI
Sbjct: 322 PPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 369
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 252 bits (617), Expect = 4e-67
Identities = 148/408 (36%), Positives = 216/408 (52%), Gaps = 40/408 (9%)
Query: 1 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 60
M D + A V+D G+G K GFAG+ P+ + PS VG + + + D
Sbjct: 1 MEDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDS 52
Query: 61 FIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNT 119
++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 53 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 112
Query: 120 PENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVP 179
NRE + +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP
Sbjct: 113 KANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVP 164
Query: 180 VAEGYVIGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKYSYICPDIA 239
+ EGY + I + +AGR++T ++ +L ER E + IKEK Y+ D
Sbjct: 165 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFE 224
Query: 240 KEFAKYDSDPGKWMKKYTGINAITKNPFTVDVGYERFLGPEIFFHPEFSNADFTVPLNEM 299
+E S K Y + + +G ERF PE F P F + + ++E
Sbjct: 225 QEMQTAASS-SSLEKSYE-----LPDGQVITIGNERFRCPEAMFQPSFLGME-SAGIHET 277
Query: 300 VDEVIQSCPIDVRRGLYGNIVLSGGSTMFRDFGRRLQRDIKRAVDARLKLSTMLSEGRIT 359
I C +D+R+ LY N VLSGGSTM+ R+Q++I +
Sbjct: 278 TYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEIT----------------SLA 321
Query: 360 PKPIDVQVVSHNMQRYAVWFGGSMLASTPEFYQVCHTKQAYMEYGPSI 407
P + +++++ ++Y+VW GGS+LAS F Q+ +KQ Y E GPSI
Sbjct: 322 PPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 369
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 251 bits (615), Expect = 7e-67
Identities = 147/406 (36%), Positives = 215/406 (52%), Gaps = 40/406 (9%)
Query: 3 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 62
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 63 GDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 121
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 122 NREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVA 181
NRE + +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+
Sbjct: 116 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIY 167
Query: 182 EGYVIGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKYSYICPDIAKE 241
EGY + I + +AGR++T ++ +L ER E + IKEK Y+ D +E
Sbjct: 168 EGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQE 227
Query: 242 FAKYDSDPGKWMKKYTGINAITKNPFTVDVGYERFLGPEIFFHPEFSNADFTVPLNEMVD 301
S K Y + + +G ERF PE F P F + + ++E
Sbjct: 228 MTTAASS-SSLEKSYE-----LPDGQVITIGNERFRCPEAMFQPSFLGME-SAGIHETTY 280
Query: 302 EVIQSCPIDVRRGLYGNIVLSGGSTMFRDFGRRLQRDIKRAVDARLKLSTMLSEGRITPK 361
I C +D+R+ LY N VLSGGSTM+ R+Q++I + P
Sbjct: 281 NSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEI----------------SALAPP 324
Query: 362 PIDVQVVSHNMQRYAVWFGGSMLASTPEFYQVCHTKQAYMEYGPSI 407
+ +++++ ++Y+VW GGS+LAS F Q+ +KQ Y E GPSI
Sbjct: 325 TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 370
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 251 bits (614), Expect = 9e-67
Identities = 147/406 (36%), Positives = 215/406 (52%), Gaps = 40/406 (9%)
Query: 3 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 62
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEIAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 63 GDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 121
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 122 NREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVA 181
NRE + +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+
Sbjct: 116 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIY 167
Query: 182 EGYVIGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKYSYICPDIAKE 241
EGY + I + +AGR++T ++ +L ER E + IKEK Y+ D +E
Sbjct: 168 EGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQE 227
Query: 242 FAKYDSDPGKWMKKYTGINAITKNPFTVDVGYERFLGPEIFFHPEFSNADFTVPLNEMVD 301
S K Y + + +G ERF PE F P F + + ++E
Sbjct: 228 METAASS-SSLEKSYE-----LPDGQVITIGNERFRCPEAMFQPSFLGME-SAGIHETTY 280
Query: 302 EVIQSCPIDVRRGLYGNIVLSGGSTMFRDFGRRLQRDIKRAVDARLKLSTMLSEGRITPK 361
I C +D+R+ LY N VLSGGSTM+ R+Q++I + P
Sbjct: 281 NSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEIT----------------SLAPP 324
Query: 362 PIDVQVVSHNMQRYAVWFGGSMLASTPEFYQVCHTKQAYMEYGPSI 407
+ +++++ ++Y+VW GGS+LAS F Q+ +KQ Y E GPSI
Sbjct: 325 TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 370
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 198 bits (484), Expect = 5e-51
Identities = 137/406 (33%), Positives = 203/406 (50%), Gaps = 67/406 (16%)
Query: 3 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 62
D + A VID G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DDIAALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 63 GDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 121
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 122 NREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVA 181
NRE + +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+
Sbjct: 116 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVSHTVPIY 167
Query: 182 EGYVIGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKYSYICPDIAKE 241
E G + T+ ERE+ + IKEK Y+ D +E
Sbjct: 168 EE------------RGYSFTT-----TAEREI----------VRDIKEKLCYVALDFEQE 200
Query: 242 FAKYDSDPGKWMKKYTGINAITKNPFTVDVGYERFLGPEIFFHPEFSNADFTVPLNEMVD 301
S K Y + + +G ERF PE P F + + ++E
Sbjct: 201 MQTAASS-SSIEKSYE-----LPDGQVITIGNERFRCPEALLQPSFLGME-SSGIHETTY 253
Query: 302 EVIQSCPIDVRRGLYGNIVLSGGSTMFRDFGRRLQRDIKRAVDARLKLSTMLSEGRITPK 361
I C +D+R+ LY N V+SGG+TM+ R+Q++I + P
Sbjct: 254 NSIMKCDVDIRKDLYANTVMSGGTTMYPGLADRMQKEI----------------SALAPS 297
Query: 362 PIDVQVVSHNMQRYAVWFGGSMLASTPEFYQVCHTKQAYMEYGPSI 407
+ +++++ ++Y+VW GGS+LAS F Q+ +KQ Y E GP+I
Sbjct: 298 TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAI 343
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 194 bits (474), Expect = 8e-50
Identities = 125/339 (36%), Positives = 183/339 (53%), Gaps = 31/339 (9%)
Query: 9 VIDVGTGYTKLGFAGNKEPQFIIPSTIA---IKETAKVGDQSTRRMTKAVEDLDFFIGDE 65
V D GTG+ K G+AG+ P I PS + I+ + KVGD +E D +GDE
Sbjct: 10 VCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGD---------IEVKDLMVGDE 60
Query: 66 AFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVF--KYLRAEPEDHHFLMTEPPLNTPEN 122
A + V YP+ +GIV +WD M +++ F + +P + L+TEPPLN +N
Sbjct: 61 ASQLRYMLEVNYPMDNGIVRNWDDM-KHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKN 119
Query: 123 REYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAE 182
RE + E+MFE++ G+YIA+QAVL L A + TG+V+DSGDGVTHI PV E
Sbjct: 120 REKMIEVMFENYQFEGVYIAIQAVLTLYA--------QGLLTGVVIDSGDGVTHICPVYE 171
Query: 183 GYVIGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKYSYICPDIAKEF 242
G+ + + + IAGR+IT ++ L+ R ET + +KEK Y+ +I +E
Sbjct: 172 GFALPHLTRRLDIAGRDITKYLIKLMLLRGYAFNHTADFETVRMMKEKLCYVGYNIEQE- 230
Query: 243 AKYDSDPGKWMKKYTGINAITKNPFTVDVGYERFLGPEIFFHPEFSNADFTVPLNEMVDE 302
K + +++YT + V + ERF PE F P N + V + E++
Sbjct: 231 QKLALETTVLVEQYT-----LPDGRVVKLSGERFEAPEALFQPHLINVE-GVGVAELLFN 284
Query: 303 VIQSCPIDVRRGLYGNIVLSGGSTMFRDFGRRLQRDIKR 341
IQ+ ID R Y +IVLSGGSTM+ RL+R+IK+
Sbjct: 285 TIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLEREIKQ 323
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 167 bits (405), Expect = 2e-41
Identities = 99/286 (34%), Positives = 151/286 (52%), Gaps = 31/286 (10%)
Query: 122 NREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVA 181
N + + +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIY 129
Query: 182 EGYVIGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKYSYICPDIAKE 241
EGY + I + +AGR++T ++ +L ER E + IKEK Y+ D +E
Sbjct: 130 EGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQE 189
Query: 242 FAKYDSDPGKWMKKYTGINAITKNPFTVDVGYERFLGPEIFFHPEFSNADFTVPLNEMVD 301
S K Y + + +G ERF PE F P F + + ++E
Sbjct: 190 MQTAASS-SSLEKSYE-----LPDGQVITIGNERFRCPEAMFQPSFLGME-SAGIHETTY 242
Query: 302 EVIQSCPIDVRRGLYGNIVLSGGSTMFRDFGRRLQRDIKRAVDARLKLSTMLSEGRITPK 361
I C +D+R+ LY N VLSGG+TM+ R+Q++I + P
Sbjct: 243 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI----------------SALAPP 286
Query: 362 PIDVQVVSHNMQRYAVWFGGSMLASTPEFYQVCHTKQAYMEYGPSI 407
+ +++++ ++Y+VW GGS+LAS F Q+ +KQ Y E GP+I
Sbjct: 287 TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAI 332
Score = 61.3 bits (142), Expect = 1e-09
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 1 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 60
M D + A VID G+G K GFAG+ P+ + PS VG + + + D
Sbjct: 1 MDDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDS 52
Query: 61 FIGDEAFEATG-YSVKYPVRHGIVEDWDLMER 91
++GDEA G ++KYP+ HGIV +WD ME+
Sbjct: 53 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEK 84
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 142 bits (343), Expect = 6e-34
Identities = 94/276 (34%), Positives = 142/276 (51%), Gaps = 20/276 (7%)
Query: 98 FKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRT 157
F LR ED L+TE PLN NRE + ++MFESFNVP +Y+AVQAV+AL AS ++
Sbjct: 2136 FDQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALYASGRT-- 2193
Query: 158 SAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGRNITSFIQSLLREREVGIPP 217
TG V D GDGV+H VPV +GY + + I +AGR++T ++Q L+ ER
Sbjct: 2194 ------TGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQS 2247
Query: 218 EQSLETAKAIKEKYSYICPDIAKEFAKYDSDPGKWMKKYTGINAITKNPFTVDVGYERFL 277
+ + +KE Y D +E + ++ + + ++ +G ERF
Sbjct: 2248 TAEQQIIRDLKETLCYCAMDYERELKEAETSDD------CEAPYMLPDGQSIRIGSERFR 2301
Query: 278 GPEIFFHPEFSNADFTVPLNEMVDEVIQSCPIDVRRGLYGNIVLSG-GSTMFRD-FGRRL 335
E F P D ++E + + I+ C ID+R L+ NIVLSG S +RD F +R
Sbjct: 2302 AAEPLFQPSLLGRDID-GIHESIFKSIKKCDIDLRAELFHNIVLSGEDSKDYRDMFMKRC 2360
Query: 336 QRDIKRAVDARLKLSTMLSEGRIT---PKPIDVQVV 368
R DA L +L E +++ P+ +V ++
Sbjct: 2361 SRMTLDIFDAIEMLEVILEENKVSHDVPRSYEVAIL 2396
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 131 bits (316), Expect = 1e-30
Identities = 60/95 (63%), Positives = 72/95 (75%)
Query: 18 KLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVKYP 77
K G+ K Q TIAIKE+AKVG++S R K VEDLDFFIGDEA + Y+ K+P
Sbjct: 242 KRGYDLAKAVQSNTQGTIAIKESAKVGNKSLGRSAKGVEDLDFFIGDEAIDKPSYATKWP 301
Query: 78 VRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLM 112
+RH IVEDWDLMER+ EQC+FKYLRAEPEDH+FL+
Sbjct: 302 IRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 61.3 bits (142), Expect = 1e-09
Identities = 27/36 (75%), Positives = 30/36 (83%)
Query: 145 AVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 180
AVLALAASW SR ERT TG V+DSGDGVTH++PV
Sbjct: 337 AVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPV 372
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 101 bits (242), Expect = 1e-21
Identities = 52/123 (42%), Positives = 78/123 (63%), Gaps = 8/123 (6%)
Query: 108 HHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIV 167
H L+TE PLN NRE AE+ FE+FNVP L+I++QAVL+L A+ ++ TG+V
Sbjct: 127 HPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRT--------TGVV 178
Query: 168 VDSGDGVTHIVPVAEGYVIGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAI 227
+D+GDGV+H VP+ EG+ + I IAGR+++ +++ LLR+ LE + I
Sbjct: 179 LDAGDGVSHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSELEIVRTI 238
Query: 228 KEK 230
KE+
Sbjct: 239 KEE 241
Score = 39.9 bits (89), Expect = 0.004
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 298 EMVDEVIQSCPIDVRRGLYGNIVLSGGSTMFR 329
E++ IQ +D+RR LY NIVLSGGST+F+
Sbjct: 259 EVLAFAIQKSDLDLRRVLYSNIVLSGGSTLFK 290
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 96.3 bits (229), Expect = 4e-20
Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 8/141 (5%)
Query: 77 PVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNV 136
P++ G++EDWDL E+ ++ K ++++ H LM+E NT RE L E+MFE +NV
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 137 PGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIA 196
P ++ +VL A+ +S G+V+DSG T VPV +GYV+ I P+A
Sbjct: 63 PAFFLCKNSVLTAFANGRS--------NGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLA 114
Query: 197 GRNITSFIQSLLREREVGIPP 217
G IT+ + + E V + P
Sbjct: 115 GDFITAQCRQMFEETNVEVIP 135
Score = 41.5 bits (93), Expect = 0.001
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 296 LNEMVDEVIQSCPIDVRRGLYGNIVLSGGSTMFRDFGRRLQRDIKRAVDARLKLSTMLSE 355
+ ++V + ID+R GL+ +++++GG+T+ + F RL R++ ++L + +
Sbjct: 152 VTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNN 211
Query: 356 GRITPKPIDVQVVSHNMQRYAVWFGGSMLAS 386
+ +R+ W GGS+LAS
Sbjct: 212 SSVE-------------KRFNPWIGGSILAS 229
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 93.1 bits (221), Expect = 4e-19
Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 8/113 (7%)
Query: 129 IMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGS 188
IMFE+FN P +Y+A+QAVL+L AS ++ TG+V DSGDGV+H VP+ EGY +
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRT--------TGVVFDSGDGVSHNVPIYEGYALPH 52
Query: 189 CIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKYSYICPDIAKE 241
I + +AGR++T ++ L+ ER E + IKEK Y+ D +E
Sbjct: 53 AILRLDLAGRDLTDYLMKLMTERGYSFTTTAEREIVRDIKEKLCYVALDFYQE 105
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 91.1 bits (216), Expect = 2e-18
Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 17/139 (12%)
Query: 269 VDVGYERFLGPEIFFHPEFSNADFTVPLNEMVDEVIQSCPIDVRRGLYGNIVLSGGSTMF 328
+ +G ERF PE F P F + ++E + I C +D+R+ LY N VLSGGSTMF
Sbjct: 22 ISIGNERFRCPEAMFQPAFLGME-APGIHEAIYNCIMKCDVDIRKDLYSNCVLSGGSTMF 80
Query: 329 RDFGRRLQRDIKRAVDARLKLSTMLSEGRITPKPIDVQVVSHNMQRYAVWFGGSMLASTP 388
R+Q++I +A +K V+V++ ++Y+VW GGS+LAS
Sbjct: 81 PGIADRMQKEIAMLANASMK----------------VKVIAPPERKYSVWIGGSILASLS 124
Query: 389 EFYQVCHTKQAYMEYGPSI 407
F Q+ K+ Y EYGP I
Sbjct: 125 TFQQMWIAKEEYHEYGPPI 143
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 44.8 bits (101), Expect = 1e-04
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 8/142 (5%)
Query: 165 GIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGRNITSFIQSLLR-EREVGIPPEQSLET 223
G+ + SG T + EG+ + ++ + I G ++T ++ LR +R +
Sbjct: 780 GVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQRGHNFTSSSGWQI 839
Query: 224 AKAIKEKYSYICPDIAKEFAKYDSDPGKWMKKYTGINAITKNPFTVDVGYERFLGPEIFF 283
IKEK Y+ D KE Y ++ G K YT + + +GYE E F
Sbjct: 840 VNDIKEKICYLSKDHLKEVHNYKTNEG-LTKFYT-----LPDGQMISIGYECISSMEPLF 893
Query: 284 HPE-FSNADFTVPLNEMVDEVI 304
P+ A+ T+ V E+I
Sbjct: 894 RPDLLLQANDTIASQPPVYELI 915
Score = 33.5 bits (73), Expect = 0.33
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 7 ACVIDVGTGYTKLGFAGNKEPQFIIPSTI 35
A V+D G G +K+GFAG++ P+ I P+ +
Sbjct: 702 AIVLDNGCGISKIGFAGDRVPRIIQPAVV 730
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 40.3 bits (90), Expect = 0.003
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 307 CPIDVRRGLYGNIVLSGGSTMFRDFGRRLQRDIKRAVDA-RLKLSTMLSEGRITPKPIDV 365
CPID R+ L NIVL GG+ M F RL ++I + + + K + ++ P++
Sbjct: 69 CPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNA 128
Query: 366 QVVSHNMQRYAVWFGGSMLASTPEFYQVCHTKQAYMEY 403
+ + W GG++ S T++ Y ++
Sbjct: 129 NITA--------WLGGAIFGSLEVLADRSTTRERYQQH 158
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 39.5 bits (88), Expect = 0.005
Identities = 52/186 (27%), Positives = 76/186 (40%), Gaps = 41/186 (22%)
Query: 9 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 68
V+D G K+GFA N+ P+ I P+ I AK S RR FIGD+ E
Sbjct: 237 VLDCGACSQKIGFASNQAPRSI-PNAIF---KAK----SERRK--------LFIGDQIEE 280
Query: 69 ATGYSVKY---PVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 125
YS + P + G + +WD +E+ ++ Y +
Sbjct: 281 CKDYSALFYVLPFQKGFLVNWD-----VEKQIWDYT---------------FGKEGLEDA 320
Query: 126 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYV 185
+ EI+FE +N L A L+ + S +VVD+G THIVPV G V
Sbjct: 321 MDEILFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVC--LVVDTGYSFTHIVPVFNGKV 378
Query: 186 IGSCIK 191
I ++
Sbjct: 379 IKKAVR 384
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 36.3 bits (80), Expect = 0.046
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 98 FKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLAL 149
F L+ +P H +MT P + +E L EI+ F V +Y+ Q++LA+
Sbjct: 518 FLSLKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAM 569
>SB_28140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 31.9 bits (69), Expect = 1.00
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 297 NEMVDEVIQSCPIDVRRGLYGNIVLSGGSTMFRDFGRRLQRDIKRAVDARLKLSTMLSEG 356
NE + ++ SCP++ + I GST F + + K+ + K+ +L
Sbjct: 40 NEFAEVLLHSCPLNPQHSFAEGITAEVGSTNLLTFRPQQDQTFKKMIKKMYKVCFLLRFT 99
Query: 357 RITPKPIDVQVVSHNMQR 374
+ + + + HNM R
Sbjct: 100 SFCAR-MQIATIDHNMHR 116
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 30.3 bits (65), Expect = 3.0
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 301 DEVIQSCPIDVRRGLYG--NIVLSGGSTMFRDFGRRLQRDI 339
D S I+ R+ +G N+ ++GG+TM+ +F RL+R++
Sbjct: 113 DPDFASTSIEDRKWTFGRCNVFVTGGNTMYNNFMARLEREL 153
>SB_15553| Best HMM Match : SCP (HMM E-Value=1.1e-16)
Length = 141
Score = 30.3 bits (65), Expect = 3.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 113 TEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 148
T PP N P E +A++M++S + G+ I+ V+A
Sbjct: 88 TNPPANAPAGTEEVAQLMWQSTSAVGVGISGNVVVA 123
>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 29.9 bits (64), Expect = 4.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 370 HNMQ-RYAVWFGGSMLASTPEFYQVCHTKQAYMEYGPSICR 409
HN++ R A W G S++ S P QV HT + P++C+
Sbjct: 191 HNLRDRRATWNGDSLMWSKPGRIQVPHTFAVHSYKKPTMCQ 231
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 29.5 bits (63), Expect = 5.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 9 VIDVGTGYTKLGFAGNKEPQFIIPSTI 35
VIDVG+ K+GFAG+ P+ + P +
Sbjct: 1360 VIDVGSHMWKVGFAGDDAPKGVFPPIV 1386
>SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07)
Length = 438
Score = 29.1 bits (62), Expect = 7.0
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 186 IGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKY 231
+G+ ++H+ + G++ S +R+ +V E+S + AK+++E Y
Sbjct: 184 LGAWMEHVGVLGKDFDWEEWSKIRKEDVAAYKERSAQRAKSLEEDY 229
>SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)
Length = 1814
Score = 29.1 bits (62), Expect = 7.0
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 13 GTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGY 72
GT KL F E I + + + Q + +A+ +L+ + F T Y
Sbjct: 1230 GTTLEKLTFGSVLESADQIVTHADVLKELNSRAQGEVSIREALRELELWGAGAVFSLTSY 1289
Query: 73 SVKYPVRHGIVEDWDLMERYI--EQCVFKYLRAEP 105
S + I++DW + + QC+ + L+ P
Sbjct: 1290 SDSHEKELSIIKDWKELVNQVGDNQCLLQSLKDSP 1324
>SB_29922| Best HMM Match : DUF1047 (HMM E-Value=7.3)
Length = 210
Score = 29.1 bits (62), Expect = 7.0
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 186 IGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKY 231
+G+ ++H+ + G++ S +R+ +V E+S + AK+++E Y
Sbjct: 49 LGAWMEHVGVLGKDFDWEEWSKIRKEDVAAYKERSAQRAKSLEEDY 94
>SB_5104| Best HMM Match : DUF1047 (HMM E-Value=7.3)
Length = 283
Score = 29.1 bits (62), Expect = 7.0
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 186 IGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKY 231
+G+ ++H+ + G++ S +R+ +V E+S + AK+++E Y
Sbjct: 61 LGAWMEHVGVLGKDFDWEEWSKIRKEDVAAYKERSAQRAKSLEEDY 106
>SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)
Length = 957
Score = 28.7 bits (61), Expect = 9.3
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 165 GIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGRNITSFIQSLLREREVGIPP 217
G+V+++GD V +VP+A V+G +PIAG ++ + L + +G+ P
Sbjct: 776 GVVLNAGDVVLGVVPIAGDVVLGV----VPIAG-DVVLGVVPLAGDVVLGVVP 823
>SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)
Length = 290
Score = 28.7 bits (61), Expect = 9.3
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 152 SWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVI---GSCIKHIPIAGRNITSFIQSLL 208
SW+S T ER GI++ S TH+ + G+ + G+ +P+ ++ + L
Sbjct: 34 SWESLTFGERKQLGIILSSIQDHTHVASLL-GFTLSVKGASQDEVPLISTSLADVLMKTL 92
Query: 209 REREVGIPPEQSLETAKAIKEKYSYICPDIAKE 241
R + E+ LE+ + S P+ +E
Sbjct: 93 L-RNLAFHTERCLESIEKSITTSSESIPEECEE 124
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.138 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,688
Number of Sequences: 59808
Number of extensions: 589171
Number of successful extensions: 1193
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1111
Number of HSP's gapped (non-prelim): 52
length of query: 418
length of database: 16,821,457
effective HSP length: 84
effective length of query: 334
effective length of database: 11,797,585
effective search space: 3940393390
effective search space used: 3940393390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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