GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001921-TA|BGIBMGA001921-PA|IPR004000|Actin/actin-like
         (418 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              72   8e-15
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   2.1  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   3.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   3.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   6.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   6.4  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 72.1 bits (169), Expect = 8e-15
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 17/125 (13%)

Query: 269 VDVGYERFLGPEIFFHPEFSNADFTVPLNEMVDEVIQSCPIDVRRGLYGNIVLSGGSTMF 328
           + +G ERF  PE  F P F   +    ++E     I  C +D+R+ LY N VLSGG+TM+
Sbjct: 23  ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 81

Query: 329 RDFGRRLQRDIKRAVDARLKLSTMLSEGRITPKPIDVQVVSHNMQRYAVWFGGSMLASTP 388
                R+Q++I                  + P  + +++++   ++Y+VW GGS+LAS  
Sbjct: 82  PGIADRMQKEIT----------------ALAPSTMKIKIIAPPEKKYSVWIGGSILASLS 125

Query: 389 EFYQV 393
            F Q+
Sbjct: 126 TFQQM 130


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase
          protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 14 TGYTKLGFAGNKE--PQFIIPSTIAIKETAKVGDQSTRR--MTKAVEDLDFFIGDEAFEA 69
          TG++KL  + +K    +++        +T K    ST    +   +E+LD  +G  A +A
Sbjct: 12 TGFSKLSSSDSKSLLKKYLSKDVFDQLKTKKTSFDSTLLDCIQSGIENLDSGVGIYAPDA 71

Query: 70 TGYSVKYPVRHGIVEDW 86
            Y++   +   I+ED+
Sbjct: 72 EAYTLFADLFDPIIEDY 88


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 14/46 (30%), Positives = 19/46 (41%)

Query: 185 VIGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEK 230
           +I   + H   +G  + + I   L ERE G   E      KAI  K
Sbjct: 107 LIAEKVAHALESGLKVIACIGEKLEEREAGKTDEVVFRQTKAIANK 152


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 220 SLETAKAIKEKYSYICPDIAKEFAKYDSDPGKWMKKYTGINAITKNPFTVDVGYERFLGP 279
           S E  ++ +  +SY  PD             +W ++  GI  ++ +P  V+ GY      
Sbjct: 221 SWEQNRSWRITHSYFMPDPLAGDYNIGGLNFQWGEE--GIFGMSLSPIAVN-GYRT---- 273

Query: 280 EIFFHPEFSNADFTVPLNEMVDE 302
            +FFHP  S  +F V    + DE
Sbjct: 274 -LFFHPLSSRREFAVSTRILRDE 295


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 383 MLASTPEFYQVCHTKQAYM 401
           +++ T   Y VCH   AYM
Sbjct: 452 IMSGTSNKYGVCHADDAYM 470


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 383 MLASTPEFYQVCHTKQAYM 401
           +++ T   Y VCH   AYM
Sbjct: 452 IMSGTSNKYGVCHADDAYM 470


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,977
Number of Sequences: 429
Number of extensions: 5235
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 7
length of query: 418
length of database: 140,377
effective HSP length: 59
effective length of query: 359
effective length of database: 115,066
effective search space: 41308694
effective search space used: 41308694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)