GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001920-TA|BGIBMGA001920-PA|IPR007262|Vacuolar protein
sorting 55
         (81 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   2.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   3.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   3.8  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    19   6.7  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    19   6.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    19   6.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    19   6.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    19   6.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    19   6.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    19   6.7  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    19   8.8  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 20.6 bits (41), Expect = 2.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 14  NSACMETAVFITMGFLV 30
           NS  ++  VFIT+ F+V
Sbjct: 211 NSLILDLLVFITINFVV 227


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
          protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 45 IFWGACYLTLAGNVIVYLTILG 66
          I WG  +L +   + V+  +LG
Sbjct: 53 IEWGVKFLKVVTIITVFFVVLG 74


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
          CHS2 protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 45 IFWGACYLTLAGNVIVYLTILG 66
          I WG  +L +   + V+  +LG
Sbjct: 53 IEWGVKFLKVVTIITVFFVVLG 74


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
          peptide receptor 1 protein.
          Length = 374

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 45 IFWGACYLTLAGNVIVYLTIL 65
          + W    + +AGNV V  T+L
Sbjct: 30 LLWVLFVIIVAGNVGVLYTLL 50


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
          protein.
          Length = 383

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 52 LTLAGNVIVYLTILGFFTIFDMDDSDY 78
          L  AGNV+ Y T    +TI+  D+  +
Sbjct: 17 LASAGNVVCYFT---SWTIYRPDNGKF 40


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 51  YLTLAGNVIVYLTILGFFT 69
           Y+T+ G+V+ +L I    T
Sbjct: 465 YVTVNGDVVSHLNITAIHT 483


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 35  LPIVLARAGVIFWGACYLTLAGNV 58
           LPI + R  VI      LTL G++
Sbjct: 715 LPISVDRKAVIAENTYLLTLDGDI 738


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 35  LPIVLARAGVIFWGACYLTLAGNV 58
           LPI + R  VI      LTL G++
Sbjct: 715 LPISVDRKAVIAENTYLLTLDGDI 738


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 35  LPIVLARAGVIFWGACYLTLAGNV 58
           LPI + R  VI      LTL G++
Sbjct: 715 LPISVDRKAVIAENTYLLTLDGDI 738


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 35  LPIVLARAGVIFWGACYLTLAGNV 58
           LPI + R  VI      LTL G++
Sbjct: 715 LPISVDRKAVIAENTYLLTLDGDI 738


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 5/21 (23%), Positives = 13/21 (61%)

Query: 54  LAGNVIVYLTILGFFTIFDMD 74
           L  +V+V++ ++G+    + D
Sbjct: 94  LGYSVVVFVVVMGYIGFIEWD 114


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.332    0.142    0.457 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,093
Number of Sequences: 317
Number of extensions: 655
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 81
length of database: 114,650
effective HSP length: 46
effective length of query: 35
effective length of database: 100,068
effective search space:  3502380
effective search space used:  3502380
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (20.1 bits)
S2: 36 (18.6 bits)