GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001920-TA|BGIBMGA001920-PA|IPR007262|Vacuolar protein
sorting 55
         (81 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar...    31   0.025
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    30   0.033
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    25   0.95 
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    23   3.8  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    22   8.9  

>SPAC630.11 |vps55||vacuolar sorting protein Vps55
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 30.7 bits (66), Expect = 0.025
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 29  LVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGFFTIFDMDDSDY 78
           + + FALPIV    G+I   A  ++  G  I++L I  +   F   + ++
Sbjct: 73  ICTGFALPIVFVNVGLIGTAAATMSCVGGSIIFLVITLYSQAFVQHEEEF 122


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 30.3 bits (65), Expect = 0.033
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 24  ITMGFLVSSFALPIVLARAGVIFWGAC 50
           I +  L+S+FAL I   ++G  FWGAC
Sbjct: 177 IAITLLMSTFALWIKAVKSGSSFWGAC 203


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 0.95
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 29  LVSSFALPIVLARAGVIFWGACYLTLAGNVIV-YLTILGFFTI 70
           L+++++ P   + + VI W  C    + ++I+ YL+ LGFF +
Sbjct: 180 LLNAYSPPKSASASSVIVW-VCGAKKSESIIIPYLSSLGFFVV 221


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 28  FLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGFFTIF 71
           F + SFA+  VL   G+I +     T A   + ++++    TI+
Sbjct: 460 FTLPSFAIAAVLVHLGIIMFDNMTTTWAMATLAFISLSLVATIY 503


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 46  FWGACYLTLAGNVIVYL 62
           F+G C+L L  ++ V+L
Sbjct: 934 FYGDCFLKLGASITVFL 950


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.332    0.142    0.457 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 339,113
Number of Sequences: 5004
Number of extensions: 10263
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 5
length of query: 81
length of database: 2,362,478
effective HSP length: 60
effective length of query: 21
effective length of database: 2,062,238
effective search space: 43306998
effective search space used: 43306998
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 45 (22.2 bits)