Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001920-TA|BGIBMGA001920-PA|IPR007262|Vacuolar protein
sorting 55
(81 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1124 - 34279570-34279765,34280074-34280158,34280236-342802... 37 0.002
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164... 32 0.067
01_01_0795 - 6187518-6188219 27 1.9
03_05_0101 - 20803546-20803800,20803907-20804700,20804788-208050... 27 2.5
09_03_0127 + 12573429-12574857,12575269-12575903 26 3.3
01_01_0778 + 6024154-6024315,6024725-6024802,6024909-6025071,602... 26 3.3
05_01_0541 - 4677830-4678672,4678765-4679241 26 4.4
10_08_0970 + 21944930-21945061,21945532-21945650,21945758-219458... 25 5.8
06_02_0017 - 10649527-10651183,10651264-10652363 25 5.8
10_02_0156 + 5946160-5946423,5946558-5947063,5947430-5947486,594... 25 7.6
10_02_0037 - 4441440-4443242 25 7.6
03_05_0531 - 25317446-25317762,25318000-25318160,25318239-253183... 25 7.6
02_05_0170 - 26431937-26434282 25 7.6
>02_05_1124 -
34279570-34279765,34280074-34280158,34280236-34280275,
34280371-34280460
Length = 136
Score = 36.7 bits (81), Expect = 0.002
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 23 FITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGFFTIFDMDD 75
F+T +V S A+P +L AGVI WGA + L+ ++ + IL + D+
Sbjct: 79 FLTGASIVGSIAIPSILKHAGVIGWGALTMELSSFLVFGVAILWLIQMNSEDE 131
>01_07_0303 +
42615578-42615709,42616273-42616312,42616393-42616477,
42616634-42616813,42618274-42618354,42618890-42619011,
42619867-42620723,42621656-42621897,42622107-42622200,
42622306-42622476,42622695-42622740,42624101-42624111,
42624141-42624392
Length = 770
Score = 31.9 bits (69), Expect = 0.067
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 8 DGAGGSNSACMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGF 67
DG G N+A F+T + S A+P +L AG+I GA ++ I+ T++ F
Sbjct: 83 DGGGWFNAA-----KFLTGASAMGSIAIPAILRHAGLIETGAMFIEFTSFFILVCTVMCF 137
>01_01_0795 - 6187518-6188219
Length = 233
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 9 GAGGSNSACMETAVFITMGFLVSSFALPIVL 39
G GG NS C T G L +SFAL L
Sbjct: 19 GGGGGNSGCCSTTTL--FGALAASFALSFFL 47
>03_05_0101 -
20803546-20803800,20803907-20804700,20804788-20805042,
20805143-20805263,20805716-20805768,20805979-20806239,
20806734-20806784,20806900-20807148,20807257-20807479,
20807737-20807910
Length = 811
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 16 ACMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGFFTIFDMDD 75
+C+ T F T GF+V + + +VL + L V ++ +L FF +F +
Sbjct: 445 SCVITLSFRTTGFIVKAHEICVVLVMVITTILMTIVMLLVWKVNIWWIVL-FFVVFMSTE 503
Query: 76 SDY 78
+ Y
Sbjct: 504 TVY 506
>09_03_0127 + 12573429-12574857,12575269-12575903
Length = 687
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 4 RRHTDGAGGSNSACMETAVFITMGFLVSSFALPI 37
RR G GG +A ET+ +T G S+++LP+
Sbjct: 298 RRRPSGVGGKTAATTETSSSVTPG--KSAYSLPM 329
>01_01_0778 +
6024154-6024315,6024725-6024802,6024909-6025071,
6025484-6025788,6025897-6025961,6026570-6026763,
6027233-6027441,6028147-6028325,6029345-6029459,
6029520-6029558
Length = 502
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 2 IARRHTDGAGGSNSACMETAVFITMGFL 29
+ARR + G N A + T +F +GFL
Sbjct: 186 VARRQVGSSTGVNGAAIITLIFAMVGFL 213
>05_01_0541 - 4677830-4678672,4678765-4679241
Length = 439
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 13 SNSACMETAVFITMGFLVSSFALPIVLARAGVIFWGACY 51
+ +A + + I + F ++ A P++L R G F+G CY
Sbjct: 275 TRAAAFDPSTPINLSFAMN--ARPLLLPRGGAGFYGNCY 311
>10_08_0970 +
21944930-21945061,21945532-21945650,21945758-21945818,
21946241-21946288,21946610-21946726,21947434-21949044
Length = 695
Score = 25.4 bits (53), Expect = 5.8
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 1 MIARRHTDGAGGSNSACMETAVFITMGFLVSSFALPIVLARAGVI--FWGACYLTLAGNV 58
++A H AGG +A + ++ L F L LAR ++ C+ +LAG +
Sbjct: 186 ILAALHRSIAGGHAAAAVALLPELSRAGLRPPFPLLSSLARLLLLRRATAPCFPSLAGRL 245
Query: 59 IVYLTILG 66
++Y+ + G
Sbjct: 246 LLYVRLAG 253
>06_02_0017 - 10649527-10651183,10651264-10652363
Length = 918
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 52 LTLAGNVIVYLTI-LGFFTIFDMDD 75
+ LAG V+VY+ I + FFT+ +MD+
Sbjct: 489 VALAGGVLVYVVIHIIFFTLDNMDN 513
>10_02_0156 +
5946160-5946423,5946558-5947063,5947430-5947486,
5947664-5947902,5948200-5948318,5948400-5948486,
5951757-5951816
Length = 443
Score = 25.0 bits (52), Expect = 7.6
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 9 GAGGSNSACMETAVFITMGFLV-SSFALPIVLARAGVIFWGACYLT---LAGNVIVYLTI 64
GAG +A + T V + + FLV +S L +V+ R WG Y +A + + I
Sbjct: 284 GAGRPQAARLATRVVMLLAFLVGTSEGLVMVIVRN---LWGYAYSNEEEVADYIAKMMPI 340
Query: 65 LGFFTIFD 72
L +FD
Sbjct: 341 LAVSILFD 348
>10_02_0037 - 4441440-4443242
Length = 600
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 42 AGVIFWGACYLTLAGNVIVYLTILG 66
+ V+ GAC ++LAG ++VYL + G
Sbjct: 99 SAVLAVGAC-MSLAGYLVVYLAVAG 122
>03_05_0531 -
25317446-25317762,25318000-25318160,25318239-25318336,
25318462-25318623,25319707-25319799,25319909-25319971,
25320549-25320694,25320804-25320961,25321033-25321225,
25321865-25322093
Length = 539
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 31 SSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILG 66
SS AL ++L V+F G L + + YLTI G
Sbjct: 226 SSMALGVLLVVLIVLFQGMKLLPMGRKSLFYLTIYG 261
>02_05_0170 - 26431937-26434282
Length = 781
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 39 LARAGVIFWGACYLTLAGNVIVYLTILGFFTIFDMDDSDY 78
L R G W + Y TL + ++ TI+ + + DD D+
Sbjct: 445 LQRPGDTRWSSHYKTLKSLLNMFPTIVQVLKVVEKDDRDW 484
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.332 0.142 0.457
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,182
Number of Sequences: 37544
Number of extensions: 78216
Number of successful extensions: 228
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 13
length of query: 81
length of database: 14,793,348
effective HSP length: 60
effective length of query: 21
effective length of database: 12,540,708
effective search space: 263354868
effective search space used: 263354868
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 52 (25.0 bits)
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