GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001920-TA|BGIBMGA001920-PA|IPR007262|Vacuolar protein
sorting 55
         (81 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55863| Best HMM Match : Homeobox (HMM E-Value=0.013)                27   2.1  
SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_3057| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-26)                  26   3.7  
SB_17091| Best HMM Match : DUF931 (HMM E-Value=8.3)                    25   6.4  
SB_28731| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.5  
SB_27934| Best HMM Match : Complex1_30kDa (HMM E-Value=1.2)            25   8.5  

>SB_55863| Best HMM Match : Homeobox (HMM E-Value=0.013)
          Length = 229

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 16  ACMETAVFITMGFLVSSFALPIVLARAGV-IFWGACYLTLA 55
           AC  TA      FLV    L ++L    + I+W  C LT+A
Sbjct: 146 ACFTTATKYVGDFLVYRIMLGLLLVLQTLHIYWAKCILTIA 186


>SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 508

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 19  ETAVFITMGFLVSSFALPIVLARAGVIFWGA 49
           +T +F+    + S+      L  AGVI WGA
Sbjct: 218 QTQIFLNKADMYSTIVQAAKLGTAGVIIWGA 248


>SB_3057| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-26)
          Length = 236

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 24  ITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGFFTIFDM 73
           +T  F+VS  A  I++A   +  WGA YL    + +  L ++  +T  D+
Sbjct: 58  VTNFFVVSLAAADILIASFSMPIWGA-YLLTGPDWVFSLNLMKMWTCMDI 106


>SB_17091| Best HMM Match : DUF931 (HMM E-Value=8.3)
          Length = 193

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/42 (21%), Positives = 23/42 (54%)

Query: 24  ITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTIL 65
           + +G +V    + +V+   G++F G   L +   V+V++ ++
Sbjct: 67  VVVGLIVVVIVIVLVVVLVGIVFVGVLVLVVGVLVVVFVCVV 108


>SB_28731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 19 ETAVFITMGFLVSSFALPIVLARAGVIFW--GACYLTLAGNVIVYLTILGFFTIFDMDD 75
          E A+  + GF   + A+P    R  V+F   G C+    G V    + + +F   DMDD
Sbjct: 17 EEAILYSYGFSTVASAIPAYSKRGDVLFCDKGVCFAIQQG-VTASRSRVMWFEHNDMDD 74


>SB_27934| Best HMM Match : Complex1_30kDa (HMM E-Value=1.2)
          Length = 385

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 26  MGFLVSSFALPIVLARAGVIFWG 48
           M  LVS+F L I+L R  +I WG
Sbjct: 123 MAGLVSTFYLAILLNRTFLIHWG 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.332    0.142    0.457 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,767
Number of Sequences: 59808
Number of extensions: 72178
Number of successful extensions: 289
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 6
length of query: 81
length of database: 16,821,457
effective HSP length: 59
effective length of query: 22
effective length of database: 13,292,785
effective search space: 292441270
effective search space used: 292441270
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 52 (25.0 bits)