GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001920-TA|BGIBMGA001920-PA|IPR007262|Vacuolar protein
sorting 55
         (81 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001754-1|AAN71509.1|  126|Drosophila melanogaster RH04491p pro...    54   2e-08
AE013599-3970|AAM70795.2|  126|Drosophila melanogaster CG30423-P...    54   2e-08
X51749-1|CAA36038.1|  687|Drosophila melanogaster protein ( Dros...    27   2.4  
X02974-1|CAA26716.2|  687|Drosophila melanogaster white pigment ...    27   2.4  
AL133506-2|CAB65847.1|  687|Drosophila melanogaster EG:BACN33B1....    27   2.4  
AE014298-466|AAF45826.1|  687|Drosophila melanogaster CG2759-PA ...    27   2.4  
AB028139-3|BAA78210.1|  706|Drosophila melanogaster white protei...    27   2.4  

>BT001754-1|AAN71509.1|  126|Drosophila melanogaster RH04491p
           protein.
          Length = 126

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 2   IARRHTDGAGGSNSACMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVY 61
           IARR T G     +   E A F+T G ++S+FALPIVLA A VI W A  LT+  N+I Y
Sbjct: 51  IARRTTPG--NETNPKSEFAHFLTAGMVLSAFALPIVLAHALVITWTASILTIISNIINY 108

Query: 62  LTILGF 67
            TI  +
Sbjct: 109 GTIFWY 114


>AE013599-3970|AAM70795.2|  126|Drosophila melanogaster CG30423-PB
           protein.
          Length = 126

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 2   IARRHTDGAGGSNSACMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVY 61
           IARR T G     +   E A F+T G ++S+FALPIVLA A VI W A  LT+  N+I Y
Sbjct: 51  IARRTTPG--NETNPKSEFAHFLTAGMVLSAFALPIVLAHALVITWTASILTIISNIINY 108

Query: 62  LTILGF 67
            TI  +
Sbjct: 109 GTIFWY 114


>X51749-1|CAA36038.1|  687|Drosophila melanogaster protein (
           Drosophila white mRNAfor eye pigment. ).
          Length = 687

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 19  ETAVFITMGFLVSSFALPIVLARAGVIFWGAC--YLTLAGNV 58
           E  +F+T+  + ++ A P++  RAGV+ +  C   +TL  NV
Sbjct: 514 ELPLFLTVPLVFTAIAYPMIGLRAGVLHFFNCLALVTLVANV 555


>X02974-1|CAA26716.2|  687|Drosophila melanogaster white pigment
           protein protein.
          Length = 687

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 19  ETAVFITMGFLVSSFALPIVLARAGVIFWGAC--YLTLAGNV 58
           E  +F+T+  + ++ A P++  RAGV+ +  C   +TL  NV
Sbjct: 514 ELPLFLTVPLVFTAIAYPMIGLRAGVLHFFNCLALVTLVANV 555


>AL133506-2|CAB65847.1|  687|Drosophila melanogaster
           EG:BACN33B1.1,FBgn0003996;w protein.
          Length = 687

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 19  ETAVFITMGFLVSSFALPIVLARAGVIFWGAC--YLTLAGNV 58
           E  +F+T+  + ++ A P++  RAGV+ +  C   +TL  NV
Sbjct: 514 ELPLFLTVPLVFTAIAYPMIGLRAGVLHFFNCLALVTLVANV 555


>AE014298-466|AAF45826.1|  687|Drosophila melanogaster CG2759-PA
           protein.
          Length = 687

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 19  ETAVFITMGFLVSSFALPIVLARAGVIFWGAC--YLTLAGNV 58
           E  +F+T+  + ++ A P++  RAGV+ +  C   +TL  NV
Sbjct: 514 ELPLFLTVPLVFTAIAYPMIGLRAGVLHFFNCLALVTLVANV 555


>AB028139-3|BAA78210.1|  706|Drosophila melanogaster white protein
           protein.
          Length = 706

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 19  ETAVFITMGFLVSSFALPIVLARAGVIFWGAC--YLTLAGNV 58
           E  +F+T+  + ++ A P++  RAGV+ +  C   +TL  NV
Sbjct: 533 ELPLFLTVPLVFTAIAYPMIGLRAGVLHFFNCLALVTLVANV 574


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.332    0.142    0.457 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,683,499
Number of Sequences: 52641
Number of extensions: 104744
Number of successful extensions: 229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 7
length of query: 81
length of database: 24,830,863
effective HSP length: 61
effective length of query: 20
effective length of database: 21,619,762
effective search space: 432395240
effective search space used: 432395240
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 53 (25.4 bits)