Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001920-TA|BGIBMGA001920-PA|IPR007262|Vacuolar protein
sorting 55
(81 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23450-4|AAN39679.1| 130|Caenorhabditis elegans Hypothetical pr... 75 5e-15
U23450-3|AAN39678.1| 132|Caenorhabditis elegans Hypothetical pr... 75 5e-15
AF101318-2|AAK68599.1| 331|Caenorhabditis elegans Seven tm rece... 28 0.68
AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical ... 28 0.68
AL117195-9|CAB55030.1| 258|Caenorhabditis elegans Hypothetical ... 25 4.8
Z92830-9|CAB07353.1| 537|Caenorhabditis elegans Hypothetical pr... 25 6.3
Z50045-2|CAA90363.2| 485|Caenorhabditis elegans Hypothetical pr... 25 6.3
U97403-3|AAB52473.1| 142|Caenorhabditis elegans Hypothetical pr... 25 6.3
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 25 8.4
>U23450-4|AAN39679.1| 130|Caenorhabditis elegans Hypothetical
protein C30B5.2b protein.
Length = 130
Score = 75.4 bits (177), Expect = 5e-15
Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 1 MIARRHTDGAGGSNSACMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIV 60
+IARR + G+N AC+E A+FIT G ++S+FALPIVLA AG I AC+L G+VI+
Sbjct: 48 LIARRFQEDMTGTN-ACIELALFITTGIVISAFALPIVLAHAGTIANSACFLVNTGSVIM 106
Query: 61 YLTILGFFTIFDMDDS 76
+ TI+ +F + DDS
Sbjct: 107 FGTIIAYFYLHRDDDS 122
>U23450-3|AAN39678.1| 132|Caenorhabditis elegans Hypothetical
protein C30B5.2a protein.
Length = 132
Score = 75.4 bits (177), Expect = 5e-15
Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 1 MIARRHTDGAGGSNSACMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIV 60
+IARR + G+N AC+E A+FIT G ++S+FALPIVLA AG I AC+L G+VI+
Sbjct: 50 LIARRFQEDMTGTN-ACIELALFITTGIVISAFALPIVLAHAGTIANSACFLVNTGSVIM 108
Query: 61 YLTILGFFTIFDMDDS 76
+ TI+ +F + DDS
Sbjct: 109 FGTIIAYFYLHRDDDS 124
>AF101318-2|AAK68599.1| 331|Caenorhabditis elegans Seven tm
receptor protein 66 protein.
Length = 331
Score = 28.3 bits (60), Expect = 0.68
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 28 FLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGFFTIFD 72
F ++F LPI ++ A + W YLT + V L I + +FD
Sbjct: 75 FSATNFQLPINISNAFITVWSCFYLTTFSFISV-LFIYRYLCLFD 118
>AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical
protein Y50D7A.1 protein.
Length = 791
Score = 28.3 bits (60), Expect = 0.68
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 6 HTDGAGGSNSACMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGN 57
HT GA ++ ++TA ++SS P + A ++ WG + GN
Sbjct: 163 HTPGAVFNDLWRLDTATLKWSRVIISSAPYPSAMCYASLVTWGTQLILFGGN 214
>AL117195-9|CAB55030.1| 258|Caenorhabditis elegans Hypothetical
protein Y57A10A.10 protein.
Length = 258
Score = 25.4 bits (53), Expect = 4.8
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 32 SFALPIVLARAGVIFW--GACYLTLAGNVIVYLTILGFFTIFDM 73
SFA + A V+ YLT A + +VYL I+GFF F +
Sbjct: 154 SFATKACVVAASVLALEKSGTYLT-APHDLVYLVIVGFFVYFKL 196
>Z92830-9|CAB07353.1| 537|Caenorhabditis elegans Hypothetical
protein F11A5.9 protein.
Length = 537
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/53 (18%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 24 ITMGFLVSSFALPIVLARAG---VIFWGACYLTLAGNVIVYLTILGFFTIFDM 73
+ +G +V+ + + +++ + G ++FW T++ +I ++ +GF+ + M
Sbjct: 116 VAVGAMVAVYPVMLLIQKFGSRSIVFWVGMLSTVSTALIPWMAYIGFWPLLVM 168
>Z50045-2|CAA90363.2| 485|Caenorhabditis elegans Hypothetical
protein F38B2.3 protein.
Length = 485
Score = 25.0 bits (52), Expect = 6.3
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 63 TILGFFTIFDMDDSDYAMW 81
T L F++IF++DD +Y+++
Sbjct: 53 TTLKFWSIFNIDDKEYSLY 71
>U97403-3|AAB52473.1| 142|Caenorhabditis elegans Hypothetical
protein T10E9.6 protein.
Length = 142
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 37 IVLARAGVIFWGACYLTLAGNVIVYLTILGFFTIFD 72
+V+A + + G G + +Y TI GFF +FD
Sbjct: 67 LVIAPIILTYLGPSDRPETGIMFIYWTIFGFFYLFD 102
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 40 ARAGVIFWGACYLTLAGNVIVYLTILGFFTIFDM 73
A G+ + + ++ LAG +IV + +LGF I+ M
Sbjct: 698 APLGIENFLSAFVLLAGGIIVSVIVLGFEHIYCM 731
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 40 ARAGVIFWGACYLTLAGNVIVYLTILGFFTIFDM 73
A G+ + + ++ LAG +IV + +LGF I+ M
Sbjct: 698 APLGIENFLSAFVLLAGGIIVSVIVLGFEHIYCM 731
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.332 0.142 0.457
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,875
Number of Sequences: 27539
Number of extensions: 57293
Number of successful extensions: 183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 10
length of query: 81
length of database: 12,573,161
effective HSP length: 61
effective length of query: 20
effective length of database: 10,893,282
effective search space: 217865640
effective search space used: 217865640
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 51 (24.6 bits)
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