GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001920-TA|BGIBMGA001920-PA|IPR007262|Vacuolar protein
sorting 55
         (81 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32410.2 68414.m04000 vacuolar protein sorting 55 family prot...    50   1e-07
At1g32410.1 68414.m03999 vacuolar protein sorting 55 family prot...    50   1e-07
At3g11530.2 68416.m01406 vacuolar protein sorting 55 family prot...    30   0.22 
At3g11530.1 68416.m01405 vacuolar protein sorting 55 family prot...    30   0.22 
At1g11670.1 68414.m01340 MATE efflux family protein similar to r...    28   0.89 
At1g09440.1 68414.m01056 protein kinase family protein contains ...    28   0.89 
At2g02870.1 68415.m00237 kelch repeat-containing F-box family pr...    26   3.6  
At1g61890.1 68414.m06982 MATE efflux family protein similar to r...    25   4.8  
At4g01970.1 68417.m00262 galactinol-raffinose galactosyltransfer...    25   8.3  
At3g53100.1 68416.m05852 GDSL-motif lipase/hydrolase family prot...    25   8.3  

>At1g32410.2 68414.m04000 vacuolar protein sorting 55 family protein
           / VPS55 family protein contains Pfam domain PF04133:
           Vacuolar protein sorting 55
          Length = 140

 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 13  SNSACMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGFFTIFD 72
           S+++ +  A F+T    V S A+P +L  AG+I WGA  L L+  V+  + ILG+  I D
Sbjct: 72  SDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYICIGD 131

Query: 73  MDDSDYA 79
             D+ Y+
Sbjct: 132 ASDNYYS 138


>At1g32410.1 68414.m03999 vacuolar protein sorting 55 family protein
           / VPS55 family protein contains Pfam domain PF04133:
           Vacuolar protein sorting 55
          Length = 140

 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 13  SNSACMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGFFTIFD 72
           S+++ +  A F+T    V S A+P +L  AG+I WGA  L L+  V+  + ILG+  I D
Sbjct: 72  SDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYICIGD 131

Query: 73  MDDSDYA 79
             D+ Y+
Sbjct: 132 ASDNYYS 138


>At3g11530.2 68416.m01406 vacuolar protein sorting 55 family protein
           / VPS55 family protein contains Pfam domain PF04133:
           Vacuolar protein sorting 55
          Length = 126

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 18  METAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGF 67
           ++ A F+T    V S A+PI+L  A +I  GA  +      I   T++ F
Sbjct: 68  IDAAKFLTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCF 117


>At3g11530.1 68416.m01405 vacuolar protein sorting 55 family protein
           / VPS55 family protein contains Pfam domain PF04133:
           Vacuolar protein sorting 55
          Length = 113

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 18  METAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGF 67
           ++ A F+T    V S A+PI+L  A +I  GA  +      I   T++ F
Sbjct: 55  IDAAKFLTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCF 104


>At1g11670.1 68414.m01340 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family; EST gb|W43487
           comes from this gene
          Length = 503

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 9   GAGGSNSACMETAVFITMGFLVSSFALPIVLARAGVI 45
           GAG   SA   TAV   + FL+S F   ++L+   VI
Sbjct: 343 GAGNPRSAAFSTAVTTGVSFLLSLFEAIVILSWRHVI 379


>At1g09440.1 68414.m01056 protein kinase family protein contains
          protein kinase domain, Pfam:PF00069
          Length = 466

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 42 AGVIFWGACYLTLAGNVIVYLTILGFFTIF 71
          AG+  W A ++T+A  +IV L++L F  I+
Sbjct: 2  AGLKIWQAIFITIALIIIVVLSVLSFCLIW 31


>At2g02870.1 68415.m00237 kelch repeat-containing F-box family
          protein weak similarity to Kelch-like protein 5
          (Swiss-Prot:Q96PQ7) [Homo sapiens]; contains Pfam
          profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 467

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 62 LTILGFFTIFDMDDSDYAM 80
          L ++GF  I+D D SDY++
Sbjct: 59 LKLMGFSIIYDSDSSDYSL 77


>At1g61890.1 68414.m06982 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 501

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 9   GAGGSNSACMETAVFITMGFLVSSFALPIVLARAGVI 45
           GAG   +A   T V   + FL+S F   +VL+   VI
Sbjct: 340 GAGNPRAAAFSTVVTTGVSFLLSVFEAIVVLSWRHVI 376


>At4g01970.1 68417.m00262 galactinol-raffinose
           galactosyltransferase, putative similar to
           galactinol-raffinose galactosyltransferase GI:6634701
           from [Vigna angularis]
          Length = 807

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 29  LVSSFALPIVLARAGVIFWGACYLTL 54
           L+    LP ++ + G   W ACYLT+
Sbjct: 222 LLEEKKLPKIVDKFGWCTWDACYLTV 247


>At3g53100.1 68416.m05852 GDSL-motif lipase/hydrolase family protein
           similar to  family II lipase EXL3 (GI:15054386), EXL1
           (GI:15054382) [Arabidopsis thaliana], SP|P40603
           Anther-specific proline-rich protein APG {Brassica
           napus}; contains InterPro Entry IPR001087 Lipolytic
           enzyme, G-D-S-L family
          Length = 351

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 16  ACMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILG 66
           AC  T    T  FL +S +    +   G +FW   + T A N ++   +LG
Sbjct: 295 ACCGTGTIET-SFLCNSLSFGTCVNATGYVFWDGFHPTEAVNELLAGQLLG 344


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.332    0.142    0.457 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,050
Number of Sequences: 28952
Number of extensions: 57092
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 10
length of query: 81
length of database: 12,070,560
effective HSP length: 60
effective length of query: 21
effective length of database: 10,333,440
effective search space: 217002240
effective search space used: 217002240
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 51 (24.6 bits)