BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001920-TA|BGIBMGA001920-PA|IPR007262|Vacuolar protein sorting 55 (81 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g32410.2 68414.m04000 vacuolar protein sorting 55 family prot... 50 1e-07 At1g32410.1 68414.m03999 vacuolar protein sorting 55 family prot... 50 1e-07 At3g11530.2 68416.m01406 vacuolar protein sorting 55 family prot... 30 0.22 At3g11530.1 68416.m01405 vacuolar protein sorting 55 family prot... 30 0.22 At1g11670.1 68414.m01340 MATE efflux family protein similar to r... 28 0.89 At1g09440.1 68414.m01056 protein kinase family protein contains ... 28 0.89 At2g02870.1 68415.m00237 kelch repeat-containing F-box family pr... 26 3.6 At1g61890.1 68414.m06982 MATE efflux family protein similar to r... 25 4.8 At4g01970.1 68417.m00262 galactinol-raffinose galactosyltransfer... 25 8.3 At3g53100.1 68416.m05852 GDSL-motif lipase/hydrolase family prot... 25 8.3 >At1g32410.2 68414.m04000 vacuolar protein sorting 55 family protein / VPS55 family protein contains Pfam domain PF04133: Vacuolar protein sorting 55 Length = 140 Score = 50.4 bits (115), Expect = 1e-07 Identities = 25/67 (37%), Positives = 39/67 (58%) Query: 13 SNSACMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGFFTIFD 72 S+++ + A F+T V S A+P +L AG+I WGA L L+ V+ + ILG+ I D Sbjct: 72 SDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYICIGD 131 Query: 73 MDDSDYA 79 D+ Y+ Sbjct: 132 ASDNYYS 138 >At1g32410.1 68414.m03999 vacuolar protein sorting 55 family protein / VPS55 family protein contains Pfam domain PF04133: Vacuolar protein sorting 55 Length = 140 Score = 50.4 bits (115), Expect = 1e-07 Identities = 25/67 (37%), Positives = 39/67 (58%) Query: 13 SNSACMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGFFTIFD 72 S+++ + A F+T V S A+P +L AG+I WGA L L+ V+ + ILG+ I D Sbjct: 72 SDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYICIGD 131 Query: 73 MDDSDYA 79 D+ Y+ Sbjct: 132 ASDNYYS 138 >At3g11530.2 68416.m01406 vacuolar protein sorting 55 family protein / VPS55 family protein contains Pfam domain PF04133: Vacuolar protein sorting 55 Length = 126 Score = 29.9 bits (64), Expect = 0.22 Identities = 16/50 (32%), Positives = 25/50 (50%) Query: 18 METAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGF 67 ++ A F+T V S A+PI+L A +I GA + I T++ F Sbjct: 68 IDAAKFLTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCF 117 >At3g11530.1 68416.m01405 vacuolar protein sorting 55 family protein / VPS55 family protein contains Pfam domain PF04133: Vacuolar protein sorting 55 Length = 113 Score = 29.9 bits (64), Expect = 0.22 Identities = 16/50 (32%), Positives = 25/50 (50%) Query: 18 METAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGF 67 ++ A F+T V S A+PI+L A +I GA + I T++ F Sbjct: 55 IDAAKFLTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCF 104 >At1g11670.1 68414.m01340 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family; EST gb|W43487 comes from this gene Length = 503 Score = 27.9 bits (59), Expect = 0.89 Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 9 GAGGSNSACMETAVFITMGFLVSSFALPIVLARAGVI 45 GAG SA TAV + FL+S F ++L+ VI Sbjct: 343 GAGNPRSAAFSTAVTTGVSFLLSLFEAIVILSWRHVI 379 >At1g09440.1 68414.m01056 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 466 Score = 27.9 bits (59), Expect = 0.89 Identities = 12/30 (40%), Positives = 20/30 (66%) Query: 42 AGVIFWGACYLTLAGNVIVYLTILGFFTIF 71 AG+ W A ++T+A +IV L++L F I+ Sbjct: 2 AGLKIWQAIFITIALIIIVVLSVLSFCLIW 31 >At2g02870.1 68415.m00237 kelch repeat-containing F-box family protein weak similarity to Kelch-like protein 5 (Swiss-Prot:Q96PQ7) [Homo sapiens]; contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain Length = 467 Score = 25.8 bits (54), Expect = 3.6 Identities = 9/19 (47%), Positives = 14/19 (73%) Query: 62 LTILGFFTIFDMDDSDYAM 80 L ++GF I+D D SDY++ Sbjct: 59 LKLMGFSIIYDSDSSDYSL 77 >At1g61890.1 68414.m06982 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family Length = 501 Score = 25.4 bits (53), Expect = 4.8 Identities = 14/37 (37%), Positives = 19/37 (51%) Query: 9 GAGGSNSACMETAVFITMGFLVSSFALPIVLARAGVI 45 GAG +A T V + FL+S F +VL+ VI Sbjct: 340 GAGNPRAAAFSTVVTTGVSFLLSVFEAIVVLSWRHVI 376 >At4g01970.1 68417.m00262 galactinol-raffinose galactosyltransferase, putative similar to galactinol-raffinose galactosyltransferase GI:6634701 from [Vigna angularis] Length = 807 Score = 24.6 bits (51), Expect = 8.3 Identities = 10/26 (38%), Positives = 15/26 (57%) Query: 29 LVSSFALPIVLARAGVIFWGACYLTL 54 L+ LP ++ + G W ACYLT+ Sbjct: 222 LLEEKKLPKIVDKFGWCTWDACYLTV 247 >At3g53100.1 68416.m05852 GDSL-motif lipase/hydrolase family protein similar to family II lipase EXL3 (GI:15054386), EXL1 (GI:15054382) [Arabidopsis thaliana], SP|P40603 Anther-specific proline-rich protein APG {Brassica napus}; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family Length = 351 Score = 24.6 bits (51), Expect = 8.3 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 16 ACMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILG 66 AC T T FL +S + + G +FW + T A N ++ +LG Sbjct: 295 ACCGTGTIET-SFLCNSLSFGTCVNATGYVFWDGFHPTEAVNELLAGQLLG 344 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.332 0.142 0.457 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,851,050 Number of Sequences: 28952 Number of extensions: 57092 Number of successful extensions: 120 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 111 Number of HSP's gapped (non-prelim): 10 length of query: 81 length of database: 12,070,560 effective HSP length: 60 effective length of query: 21 effective length of database: 10,333,440 effective search space: 217002240 effective search space used: 217002240 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (22.0 bits) S2: 51 (24.6 bits)
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