Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001919-TA|BGIBMGA001919-PA|undefined
(468 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0670 - 4976658-4978037,4978128-4979015,4982590-4983130,498... 33 0.64
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 31 2.6
11_08_0021 + 27716298-27716478,27717137-27717309,27717408-277175... 31 2.6
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 31 2.6
02_01_0672 - 4989053-4990432,4990523-4991410,4995896-4996436,499... 29 6.0
10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340 29 7.9
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 29 7.9
>02_01_0670 -
4976658-4978037,4978128-4979015,4982590-4983130,
4983209-4983845,4983962-4983992,4984094-4984324
Length = 1235
Score = 32.7 bits (71), Expect = 0.64
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 404 SMIKMNESKDLTVRDKIGKVIDLLACGQTDYNKFRAKMSELGAKGVIKMLGDDDNSDN 461
S++++ +++D D+IG + A GQ+ + + S ++ LGD ++DN
Sbjct: 582 SLVRLQQTRDSNEIDEIGVIGSTSALGQSSSHSMSRRFSAASRSSSVRSLGDARDADN 639
>11_08_0035 -
27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 30.7 bits (66), Expect = 2.6
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 389 SILNRTSLVLEYLDRSMIKMNESKDLTVRDKIGKVIDLLAC 429
S +N S++LE++ RS+ M E+ + V + + D++AC
Sbjct: 704 SCVNDASILLEFIMRSITSMEETASMKVFELVAIWADIIAC 744
>11_08_0021 +
27716298-27716478,27717137-27717309,27717408-27717578,
27717967-27718077,27718168-27718245,27718642-27718832,
27718873-27718958,27719202-27719206,27719301-27719378,
27719465-27719527,27719597-27719680,27720049-27720209,
27720377-27720416,27720774-27720893,27720993-27721211,
27721927-27722100,27722202-27722883,27722986-27723185,
27723269-27723407,27723502-27723677
Length = 1043
Score = 30.7 bits (66), Expect = 2.6
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 389 SILNRTSLVLEYLDRSMIKMNESKDLTVRDKIGKVIDLLAC 429
S +N S++LE++ RS+ M E+ + V + + D++AC
Sbjct: 657 SCVNDASILLEFIMRSITSMEETASMKVFELVAIWADIIAC 697
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 30.7 bits (66), Expect = 2.6
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 160 MLVVELQSKLSEAKYNLECNEKTYRELVNLRQMASYSIYQKNQGISDNPQ---PKCVKEM 216
+LV L+SKL + + NL +EK REL + + NQ SD + K KE+
Sbjct: 396 LLVETLRSKLEDTRENLVTSEKKAREL-EAQLQDEQLVSANNQKKSDKLEMDLRKVKKEL 454
Query: 217 SEFKLKLKSPWVKYCNKKVVIA 238
K + W K ++ IA
Sbjct: 455 EHEKAAREEAWAKVSALELEIA 476
>02_01_0672 -
4989053-4990432,4990523-4991410,4995896-4996436,
4996532-4997168,4997266-4997320,4997439-4997675
Length = 1245
Score = 29.5 bits (63), Expect = 6.0
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 404 SMIKMNESKDLTVRDKIGKVIDLLACGQTDYNKFRAKMSELGAKGVIKMLGDDDNSDN 461
S++++ +++D D+IG A GQ+ + + S + LGD + DN
Sbjct: 592 SLVRLQQTRDSNEIDEIGVTGSTSAVGQSSSHSMSRRFSAASRSSSARSLGDARDDDN 649
>10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340
Length = 603
Score = 29.1 bits (62), Expect = 7.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 158 SPMLVVELQSKLSEAKYNLECNEKTYRELVNLRQMASYSIY 198
+P+L++ L + S YN+E NE R +V + + SIY
Sbjct: 92 APILLIHLGGQDSITAYNIEDNELWKRNVVTMVSQVTVSIY 132
>07_03_1503 +
27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 29.1 bits (62), Expect = 7.9
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 364 KLDEFSSYNDTLESPS-TVNNLAYASSILNRTSLVLEYLDRSMIKMNESKDLTVRDK 419
K+DE ++ + + S VNN A SS LN TSL D S ++ N +K + +DK
Sbjct: 555 KMDEINNLSRSKSSSRIAVNNTAKGSS-LNNTSLAATVSDSSGLR-NNAKSVDEKDK 609
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.135 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,578,743
Number of Sequences: 37544
Number of extensions: 436032
Number of successful extensions: 923
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 9
length of query: 468
length of database: 14,793,348
effective HSP length: 85
effective length of query: 383
effective length of database: 11,602,108
effective search space: 4443607364
effective search space used: 4443607364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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