GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001919-TA|BGIBMGA001919-PA|undefined
         (468 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    24   2.6  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    23   3.5  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   6.1  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 20/78 (25%), Positives = 30/78 (38%)

Query: 270 KQDFLKSLKAILCDYLPMETIPKMDNVLIHKRSPYHKLNGIIIVFNDKYTLEEVRFDVTA 329
           K+  L+S  A+     P++        LIH    Y  +  +      KYT E    D T 
Sbjct: 246 KKQHLESPSALQAKVDPLKIPEAEKRKLIHLLQEYRCIFSLRPGLTHKYTHEIKLHDKTP 305

Query: 330 YSRTPSQVLALIRYIYDA 347
           + + P  V   +R   DA
Sbjct: 306 FLKRPYPVPFALRPAVDA 323


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 114 EIDDTKCTGRIQLKVYYKDDAIPLIFDD 141
           ++D T CT  +   V  +DD +  + DD
Sbjct: 44  DVDPTLCTHLLYAFVGLRDDGVVSVLDD 71


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 325 FDVTAYSRTPSQVLALIRYIYDAVPF 350
           F  T +    S V  + +++YDA+ F
Sbjct: 601 FGSTPFKELTSNVFRMNQFVYDAIDF 626


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,142
Number of Sequences: 317
Number of extensions: 4244
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 468
length of database: 114,650
effective HSP length: 59
effective length of query: 409
effective length of database: 95,947
effective search space: 39242323
effective search space used: 39242323
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)