GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001919-TA|BGIBMGA001919-PA|undefined
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   1.1  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    29   1.4  
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    29   1.8  
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy...    28   3.2  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    28   3.2  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   4.2  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    27   7.4  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    26   9.8  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    26   9.8  

>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 11/119 (9%)

Query: 253 TSTVKTDLILRLIKAEIKQDFLKSLKAILCDYLPMETIPKMDNVLIHKRSPYHKLNGIII 312
           T  +K   I +L+K ++K +FLK +K I          P+  +  I K   Y    G+  
Sbjct: 7   THNIKNSAI-QLLKTKLKNEFLKGVKCI-------TKYPENAH-SIFKVQEYTGYKGVTF 57

Query: 313 VFNDKY--TLEEVRFDVTAYSRTPSQVLALIRYIYDAVPFKILITTADQKVTAKLDEFS 369
           + + K+  T++ +   +     +PS  L L+   Y  +     I T      A L EFS
Sbjct: 58  IVSTKWNLTVDSIHKLIPEIKSSPSACLLLVNQPYPVIEKITDILTKHGITNANLLEFS 116


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 102 KVIKRISSVEKYEIDDTKCTGRIQLKVYYKDDAIPL---IFDDNLAXXXXXXXXXXXXXS 158
           ++ + ++  EKY+ +D   +GRIQ K + +  A  L   + D NL              +
Sbjct: 512 EIDRMVAEAEKYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKETVDKA 571

Query: 159 PMLVVE-LQSKLSEAKYNLECNEKTYRELVN 188
               +E L S  + AK   E  +K    + N
Sbjct: 572 VKETIEWLDSNTTAAKDEFEAKQKELESVAN 602


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 412 KDLTVRDKIGKVIDLLACGQTDYNKFRAK-MSELGAKGVIKMLGDDDNSDNEIEV 465
           +D+T  ++I +V  + A G T   +  AK M  +G +GVI +      SD E+EV
Sbjct: 167 RDITTSEEISQVATISANGDTHIGELLAKAMERVGKEGVITVKEGRTISD-ELEV 220


>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 162 VVELQSKLSEAKYNLECNEKTYRELV-NLRQ-MASY 195
           V ELQSKLSE K   E  +K   EL  ++RQ +A Y
Sbjct: 53  VKELQSKLSELKSKYEAKDKEVAELKGSIRQSLADY 88


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 382 NNLAYASSILNRTSLVLEYLDRSMI-KMNESKDLTVRDKIGKVIDLLACGQTDYNKFRAK 440
           N   ++   ++   L  ++ +R  I K  E+KDL+++++    ID+L    +D +K    
Sbjct: 146 NERLWSDPFVSSQRLRKQFRERKKIEKKQEAKDLSLKNRAALDIDILPPSSSDKDKALLL 205

Query: 441 M-SELGAKGVIKML 453
           + +ELG    I+ L
Sbjct: 206 LDNELGKNKFIRKL 219


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 355  TTADQKVTAKLDEFSSYNDTLESPSTVNNLAYASSILNRTSLVLEYLDRSMIKM-NESKD 413
            TT  +  T  L+EF+S  + L   ST   L+    ILN T   LE + ++  K    SKD
Sbjct: 1435 TTQSEPSTVSLEEFNSTKEELS--STQRKLSEIMDILNTTKEELEKVRQNSNKSEGTSKD 1492

Query: 414  LTV 416
              +
Sbjct: 1493 TEI 1495


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 16/127 (12%)

Query: 304  YHKLNGIIIVFNDKY---TLEEVRFDVTAY-SRTPSQVLALIRYIYDAVPFKILITTADQ 359
            + ++ G +IV +  Y    ++E  ++  AY ++T ++  A  RY +DA+ +  L+   D 
Sbjct: 1605 FGQVGGQVIVIHPDYIYGVIDEATYN--AYKAKTAARYKASYRYTHDALVYNNLVRAKDS 1662

Query: 360  KVTAKLDEFSSYNDTL--ESPSTVNNLAYASSI--------LNRTSLVLEYLDRSMIKMN 409
                K  E + Y + L   S S      + +++         N T+  L+ L  S+   N
Sbjct: 1663 PPYTKEQEKAVYLNPLARASKSKAGTWTFPATLPAESDISKTNETTRTLQSLTTSLTNSN 1722

Query: 410  ESKDLTV 416
            E+  + V
Sbjct: 1723 ENVGVDV 1729


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/34 (26%), Positives = 21/34 (61%)

Query: 83  FYLVQTREDFFVLSRKETLKVIKRISSVEKYEID 116
           +YL+   ++  +L R  +L++++  +S  +YE D
Sbjct: 801 YYLIDENKEISILRRILSLRIVEPTTSFTRYEYD 834


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 51  EFYQRDLICSLLLDNTSGPYSIKMLRNPE 79
           E Y ++++ S+ + N  GPY++K    PE
Sbjct: 223 EVYLKEVLDSIAILNKRGPYALKYSLKPE 251


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,154
Number of Sequences: 5004
Number of extensions: 85263
Number of successful extensions: 262
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 9
length of query: 468
length of database: 2,362,478
effective HSP length: 75
effective length of query: 393
effective length of database: 1,987,178
effective search space: 780960954
effective search space used: 780960954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)