BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001919-TA|BGIBMGA001919-PA|undefined (468 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_35110| Best HMM Match : LRR_1 (HMM E-Value=3.9e-09) 38 0.017 SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.092 SB_5413| Best HMM Match : IalB (HMM E-Value=4.5) 34 0.21 SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0) 31 1.5 SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.0 SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17) 31 2.6 SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.6 SB_42180| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.5 SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22) 30 4.6 SB_8606| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.6 SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 29 8.0 SB_6223| Best HMM Match : Ras (HMM E-Value=0) 29 8.0 SB_25623| Best HMM Match : THAP (HMM E-Value=0.00058) 29 8.0 SB_21188| Best HMM Match : Calponin (HMM E-Value=0.37) 29 8.0 >SB_35110| Best HMM Match : LRR_1 (HMM E-Value=3.9e-09) Length = 546 Score = 37.9 bits (84), Expect = 0.017 Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 4/129 (3%) Query: 334 PSQVLALIRYIYDAVPFKILITTADQKVTAKLDEFSSYNDTLESPSTVNNLAYASSILNR 393 P + IR ++ A+ ++ T + + + ++ L PS N +A IL++ Sbjct: 382 PKDIQGSIRSLHFALAHPLIFTDSQGNYKETDSKTTKVSEVLPKPSKQNKVAQLGEILDK 441 Query: 394 TSLVLEYLDRSMIKM--NESKDLTVRDKIGKVIDLLACGQTDYNKFRAKMSELGAKGVIK 451 + + ++ ++ K+ N SKD +R + K LL Q YN+ R ++ L + + Sbjct: 442 MRVQSKTVESNLEKVLSNYSKDPILRQQFPKAKTLLGEVQKKYNEVR--VASLRSNATAR 499 Query: 452 MLGDDDNSD 460 L +N+D Sbjct: 500 YLVKVENND 508 >SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2208 Score = 35.5 bits (78), Expect = 0.092 Identities = 66/324 (20%), Positives = 139/324 (42%), Gaps = 32/324 (9%) Query: 162 VVELQSKLSEAKYNLECNEKTYRELV--NLRQMASYSIYQKNQGISDNPQPKCVKEMSE- 218 ++ +QSKL E + ++ E+ +ELV N + + + + + + ++ + E Sbjct: 661 LINIQSKLEEFTFQIDALEENRQELVAENCQLREELADLENAKQLEERQLLARIETLEED 720 Query: 219 -FKLKLKSPW----VKYCNKKVVIAIDTSNHYHDVLAAITSTVKTDLILRLIKAEIK--Q 271 +L +K+ ++ C+K+ D+ H D +A++ S+ TD +L +AEIK + Sbjct: 721 LSRLSVKNDELDKAIRICSKEKEGIEDSLKHARDQIASLESS-STDASKKL-RAEIKILE 778 Query: 272 DFLKSLKAILCDYLPMETIPKMDNVLIHKRSPYHKLNGIIIVFNDKYTLEEVRFDVTAYS 331 LK K+ D L MD+ S + I DK + E++ +T Sbjct: 779 AQLKQ-KSQTVDELKSTMDTLMDSA-----SKLEEDKRKIQQQADK-RVSEMQDSITGIQ 831 Query: 332 RTPSQVLALIRYIYDAVPFKILITTADQKVTAKLDEFSSYNDTLESPSTVNNLAYASSI- 390 +T + + IR ++ + + ++ D+ +TL + + N + + Sbjct: 832 KTAANAMDDIRNQLKEREERVQVLLS--RLQQADDDKKKLEETLATRHSTANKVHELQVQ 889 Query: 391 -------LNRTSLVLEYLDRSMIKMNESKDLTVRDKIGKVIDLLACGQTDYNKFRAKMSE 443 +N + L+ M + SKD+T +D++ ++ DLL + +K + ++ Sbjct: 890 LKAKDDKVNNLQAKISKLEADMNEQQASKDITAQDRVSELKDLLKVSRESESKLQERIES 949 Query: 444 LGAK--GV-IKMLGDDDNSDNEIE 464 L K G+ + + D S E+E Sbjct: 950 LREKITGLELAAINDATASKEELE 973 >SB_5413| Best HMM Match : IalB (HMM E-Value=4.5) Length = 268 Score = 34.3 bits (75), Expect = 0.21 Identities = 37/178 (20%), Positives = 76/178 (42%), Gaps = 15/178 (8%) Query: 86 VQTREDFFVLSRKETLKVIKRISSVEKYEI--DDTKCTGRIQLKVYYKDDAIPLIFDDNL 143 + R+D + + ET VIKRI+++E+ +I + + G IQ V +D + +F++ + Sbjct: 47 ILVRQDDLLKTPIET--VIKRIANLEEEQIASNPQQVRGGIQEGV---NDLVDKLFEEKV 101 Query: 144 AXXXXXXXXXXXXXSPMLVVELQSKLSEAKYNLECNEKTYRELVNLRQMASYSIYQKNQG 203 + + + L + K L+ K R+ + + + S Y + Sbjct: 102 TAAIRKGEEFAFQRRELRLEHAEFAL-QLKSRLQKAYKVARDTLQMSHQSQKSYYDR--W 158 Query: 204 ISDNPQPKCVKEMSEFKLKLKSPWVKYCNKKVVIAIDTSNHYHDVLAAITSTVKTDLI 261 + + K VK ++E W+KYC + + + TS +H+ L + T + Sbjct: 159 VKEKIFKKVVKRLNEVVC-----WIKYCGQGKRVGLKTSVVHHNQLKPFLGNLDTSKV 211 >SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0) Length = 939 Score = 31.5 bits (68), Expect = 1.5 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Query: 48 EIQEFYQRDLICSLLLDNTSGPYSIKMLRNPEADLFYLVQTREDFFVLSRKETL----KV 103 ++ E++ I ++ DN G I+ R + D + + ED+F + + ET+ K+ Sbjct: 245 DLAEYFNWSYIAAIAEDNAYGRSGIEYFRK-QLDNRGICLSIEDYFPVGKNETIAKIQKI 303 Query: 104 IKRISSVEKYEIDDTKCT 121 +K + + K E+ CT Sbjct: 304 VKTLKELPKVEVVVLYCT 321 >SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 6500 Score = 31.1 bits (67), Expect = 2.0 Identities = 20/69 (28%), Positives = 31/69 (44%) Query: 288 ETIPKMDNVLIHKRSPYHKLNGIIIVFNDKYTLEEVRFDVTAYSRTPSQVLALIRYIYDA 347 E +PKM+ V + I +V ++R+ V + TPS L + +YDA Sbjct: 5775 EPVPKMNIVFAISSRGKARSQAIDVVTQIVKKHNQLRYSVILFGETPSTKLTFGQRMYDA 5834 Query: 348 VPFKILITT 356 K L+TT Sbjct: 5835 NTLKGLMTT 5843 Score = 29.1 bits (62), Expect = 8.0 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 10/125 (8%) Query: 304 YHKLNGIIIVFNDKYTLEEVRFDVTAYSRTPSQVLALIRYIYDA-VPFKILITT-----A 357 Y + +I DKY++ ++R+ V Y + + LA R ++D+ K+ I T Sbjct: 2414 YPPMKDVIKSMIDKYSMGKIRYSVVTYGASAVEKLA-FRDVFDSDDDLKLFIETILPVRG 2472 Query: 358 DQKVTAKLDEFSS-YNDTLESPSTVNNLAYASSILNRTSLVLEYLDRSMIKMNESKDLTV 416 + A L+E S + + P+ L S ++S ++RS I++ +SK + Sbjct: 2473 GPNLAAALEEASMIFKKDTKRPNAKKILVIISD--KKSSNSPAEIERSAIQLEKSKIKVI 2530 Query: 417 RDKIG 421 IG Sbjct: 2531 SLAIG 2535 >SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17) Length = 815 Score = 30.7 bits (66), Expect = 2.6 Identities = 17/63 (26%), Positives = 28/63 (44%) Query: 275 KSLKAILCDYLPMETIPKMDNVLIHKRSPYHKLNGIIIVFNDKYTLEEVRFDVTAYSRTP 334 KS + CDY ++ +L + Y++L+ +I K T +EVR AY P Sbjct: 82 KSTRDHFCDYSVAAESIDLEKLLQKVQDAYYRLHPHLIYLKPKVTAKEVRTKYKAYDPLP 141 Query: 335 SQV 337 + Sbjct: 142 VSI 144 >SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 499 Score = 30.7 bits (66), Expect = 2.6 Identities = 19/72 (26%), Positives = 33/72 (45%) Query: 58 ICSLLLDNTSGPYSIKMLRNPEADLFYLVQTREDFFVLSRKETLKVIKRISSVEKYEIDD 117 + +LLLDN G Y + ++F + +R D +L +E L + + E+ +D Sbjct: 287 LANLLLDNPHGGYPVVQQVESGVEVFVGMISRNDISILLSREDLFSSRENLTAEEESVDV 346 Query: 118 TKCTGRIQLKVY 129 TK + K Y Sbjct: 347 TKLDYYLMNKGY 358 >SB_42180| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 93 Score = 30.3 bits (65), Expect = 3.5 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%) Query: 274 LKSLKAILCDYLPMETIPKMDNVLIHKRSPYHKLNGIIIVFNDKYTLEEVRFDVTAYSRT 333 L LK L D+ + T+ + L+ KRSPYH ++ + K TL +R Y+ Sbjct: 20 LTPLKKSLVDFTWIRTLAR----LLEKRSPYHLAIAPLLRYEGKTTLSLIRLGKQGYTLV 75 Query: 334 PS 335 S Sbjct: 76 TS 77 >SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22) Length = 1709 Score = 29.9 bits (64), Expect = 4.6 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%) Query: 42 ICSNS-GEIQEFYQRDLICSLLLDNTSGPYSI---KMLRNPEADLFYLVQT 88 IC++S I EF D I ++++DN++G I +L EADL LV T Sbjct: 20 ICNSSCTAISEFVSHDKITNIVVDNSTGNVFIGGTNILVKTEADLEVLVNT 70 >SB_8606| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 571 Score = 29.9 bits (64), Expect = 4.6 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%) Query: 42 ICSNS-GEIQEFYQRDLICSLLLDNTSGPYSI---KMLRNPEADLFYLVQT 88 IC++S I EF D I ++++DN++G I +L EADL LV T Sbjct: 66 ICNSSCTAISEFVSHDKITNIVVDNSTGNVFIGGTNILVKTEADLEVLVNT 116 >SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) Length = 1960 Score = 29.1 bits (62), Expect = 8.0 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Query: 8 PEITR--LVPASIVNN---VSSFVFYDNHPRDQKLMDIVICSNSGEIQEFYQRDLICSLL 62 P IT L+ S V N +S VF P +L+ + S S + R+ +++ Sbjct: 1247 PNITSYPLLTTSAVGNFTSATSVVFDSTTPNATRLVPSISASISPNVTINMTREANSTMI 1306 Query: 63 LDNTSGPYSIKMLRNPEA 80 L +TS PY+ ++ P A Sbjct: 1307 LPSTSVPYNTTLIPGPNA 1324 >SB_6223| Best HMM Match : Ras (HMM E-Value=0) Length = 1665 Score = 29.1 bits (62), Expect = 8.0 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%) Query: 246 HDVLAAITS-TVKTDLILRLIKAEIKQDFLKSLKAILCDYL----PMETIPKMDNVLIHK 300 H V IT T+ I A + Q L S +C ++ PM + K + L+ Sbjct: 934 HQVFINITEETLNEGEYFANISAGMDQTVLLSGPVQVCRFVNCSSPMIALQKDEYDLLKN 993 Query: 301 RSPYHKLNGIIIVFNDKYTLEEVRFDVTAYSR 332 RS +HK +G + D + F T++SR Sbjct: 994 RSVFHKASGTMHKRKDYLNINNTVFICTSFSR 1025 >SB_25623| Best HMM Match : THAP (HMM E-Value=0.00058) Length = 538 Score = 29.1 bits (62), Expect = 8.0 Identities = 14/41 (34%), Positives = 21/41 (51%) Query: 428 ACGQTDYNKFRAKMSELGAKGVIKMLGDDDNSDNEIEVNSD 468 ACG T Y F + +E G + V+ + D S + EV S+ Sbjct: 170 ACGSTSYEYFDSDETEKGIQTVVHEMIDRSTSTEDFEVVSE 210 >SB_21188| Best HMM Match : Calponin (HMM E-Value=0.37) Length = 132 Score = 29.1 bits (62), Expect = 8.0 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 391 LNRTSLVLEYLDRSMIKMNESKD-LTVRDKIGKVIDLLACGQTDYNKFRAKMSELGAKGV 449 LN +L+LE + M N+SK L ++ K+I+ L C + NK +A + + + Sbjct: 6 LNEFTLILEDISLLMTNKNQSKQILAAYGRVKKIIEALNC--NNKNKVQADIDDASLSDL 63 Query: 450 IKMLGDD 456 L +D Sbjct: 64 PSTLIED 70 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.135 0.376 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,345,634 Number of Sequences: 59808 Number of extensions: 578968 Number of successful extensions: 1693 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 1673 Number of HSP's gapped (non-prelim): 31 length of query: 468 length of database: 16,821,457 effective HSP length: 85 effective length of query: 383 effective length of database: 11,737,777 effective search space: 4495568591 effective search space used: 4495568591 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 62 (29.1 bits)
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