GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001919-TA|BGIBMGA001919-PA|undefined
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35110| Best HMM Match : LRR_1 (HMM E-Value=3.9e-09)                 38   0.017
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.092
SB_5413| Best HMM Match : IalB (HMM E-Value=4.5)                       34   0.21 
SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0)                31   1.5  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.0  
SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)                31   2.6  
SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.6  
SB_42180| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.5  
SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22)                   30   4.6  
SB_8606| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   4.6  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        29   8.0  
SB_6223| Best HMM Match : Ras (HMM E-Value=0)                          29   8.0  
SB_25623| Best HMM Match : THAP (HMM E-Value=0.00058)                  29   8.0  
SB_21188| Best HMM Match : Calponin (HMM E-Value=0.37)                 29   8.0  

>SB_35110| Best HMM Match : LRR_1 (HMM E-Value=3.9e-09)
          Length = 546

 Score = 37.9 bits (84), Expect = 0.017
 Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 4/129 (3%)

Query: 334 PSQVLALIRYIYDAVPFKILITTADQKVTAKLDEFSSYNDTLESPSTVNNLAYASSILNR 393
           P  +   IR ++ A+   ++ T +         + +  ++ L  PS  N +A    IL++
Sbjct: 382 PKDIQGSIRSLHFALAHPLIFTDSQGNYKETDSKTTKVSEVLPKPSKQNKVAQLGEILDK 441

Query: 394 TSLVLEYLDRSMIKM--NESKDLTVRDKIGKVIDLLACGQTDYNKFRAKMSELGAKGVIK 451
             +  + ++ ++ K+  N SKD  +R +  K   LL   Q  YN+ R  ++ L +    +
Sbjct: 442 MRVQSKTVESNLEKVLSNYSKDPILRQQFPKAKTLLGEVQKKYNEVR--VASLRSNATAR 499

Query: 452 MLGDDDNSD 460
            L   +N+D
Sbjct: 500 YLVKVENND 508


>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 35.5 bits (78), Expect = 0.092
 Identities = 66/324 (20%), Positives = 139/324 (42%), Gaps = 32/324 (9%)

Query: 162 VVELQSKLSEAKYNLECNEKTYRELV--NLRQMASYSIYQKNQGISDNPQPKCVKEMSE- 218
           ++ +QSKL E  + ++  E+  +ELV  N +     +  +  + + +      ++ + E 
Sbjct: 661 LINIQSKLEEFTFQIDALEENRQELVAENCQLREELADLENAKQLEERQLLARIETLEED 720

Query: 219 -FKLKLKSPW----VKYCNKKVVIAIDTSNHYHDVLAAITSTVKTDLILRLIKAEIK--Q 271
             +L +K+      ++ C+K+     D+  H  D +A++ S+  TD   +L +AEIK  +
Sbjct: 721 LSRLSVKNDELDKAIRICSKEKEGIEDSLKHARDQIASLESS-STDASKKL-RAEIKILE 778

Query: 272 DFLKSLKAILCDYLPMETIPKMDNVLIHKRSPYHKLNGIIIVFNDKYTLEEVRFDVTAYS 331
             LK  K+   D L       MD+      S   +    I    DK  + E++  +T   
Sbjct: 779 AQLKQ-KSQTVDELKSTMDTLMDSA-----SKLEEDKRKIQQQADK-RVSEMQDSITGIQ 831

Query: 332 RTPSQVLALIRYIYDAVPFKILITTADQKVTAKLDEFSSYNDTLESPSTVNNLAYASSI- 390
           +T +  +  IR        ++ +  +  ++    D+     +TL +  +  N  +   + 
Sbjct: 832 KTAANAMDDIRNQLKEREERVQVLLS--RLQQADDDKKKLEETLATRHSTANKVHELQVQ 889

Query: 391 -------LNRTSLVLEYLDRSMIKMNESKDLTVRDKIGKVIDLLACGQTDYNKFRAKMSE 443
                  +N     +  L+  M +   SKD+T +D++ ++ DLL   +   +K + ++  
Sbjct: 890 LKAKDDKVNNLQAKISKLEADMNEQQASKDITAQDRVSELKDLLKVSRESESKLQERIES 949

Query: 444 LGAK--GV-IKMLGDDDNSDNEIE 464
           L  K  G+ +  + D   S  E+E
Sbjct: 950 LREKITGLELAAINDATASKEELE 973


>SB_5413| Best HMM Match : IalB (HMM E-Value=4.5)
          Length = 268

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 37/178 (20%), Positives = 76/178 (42%), Gaps = 15/178 (8%)

Query: 86  VQTREDFFVLSRKETLKVIKRISSVEKYEI--DDTKCTGRIQLKVYYKDDAIPLIFDDNL 143
           +  R+D  + +  ET  VIKRI+++E+ +I  +  +  G IQ  V   +D +  +F++ +
Sbjct: 47  ILVRQDDLLKTPIET--VIKRIANLEEEQIASNPQQVRGGIQEGV---NDLVDKLFEEKV 101

Query: 144 AXXXXXXXXXXXXXSPMLVVELQSKLSEAKYNLECNEKTYRELVNLRQMASYSIYQKNQG 203
                           + +   +  L + K  L+   K  R+ + +   +  S Y +   
Sbjct: 102 TAAIRKGEEFAFQRRELRLEHAEFAL-QLKSRLQKAYKVARDTLQMSHQSQKSYYDR--W 158

Query: 204 ISDNPQPKCVKEMSEFKLKLKSPWVKYCNKKVVIAIDTSNHYHDVLAAITSTVKTDLI 261
           + +    K VK ++E        W+KYC +   + + TS  +H+ L      + T  +
Sbjct: 159 VKEKIFKKVVKRLNEVVC-----WIKYCGQGKRVGLKTSVVHHNQLKPFLGNLDTSKV 211


>SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 939

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 48  EIQEFYQRDLICSLLLDNTSGPYSIKMLRNPEADLFYLVQTREDFFVLSRKETL----KV 103
           ++ E++    I ++  DN  G   I+  R  + D   +  + ED+F + + ET+    K+
Sbjct: 245 DLAEYFNWSYIAAIAEDNAYGRSGIEYFRK-QLDNRGICLSIEDYFPVGKNETIAKIQKI 303

Query: 104 IKRISSVEKYEIDDTKCT 121
           +K +  + K E+    CT
Sbjct: 304 VKTLKELPKVEVVVLYCT 321


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 20/69 (28%), Positives = 31/69 (44%)

Query: 288  ETIPKMDNVLIHKRSPYHKLNGIIIVFNDKYTLEEVRFDVTAYSRTPSQVLALIRYIYDA 347
            E +PKM+ V         +   I +V        ++R+ V  +  TPS  L   + +YDA
Sbjct: 5775 EPVPKMNIVFAISSRGKARSQAIDVVTQIVKKHNQLRYSVILFGETPSTKLTFGQRMYDA 5834

Query: 348  VPFKILITT 356
               K L+TT
Sbjct: 5835 NTLKGLMTT 5843



 Score = 29.1 bits (62), Expect = 8.0
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 10/125 (8%)

Query: 304  YHKLNGIIIVFNDKYTLEEVRFDVTAYSRTPSQVLALIRYIYDA-VPFKILITT-----A 357
            Y  +  +I    DKY++ ++R+ V  Y  +  + LA  R ++D+    K+ I T      
Sbjct: 2414 YPPMKDVIKSMIDKYSMGKIRYSVVTYGASAVEKLA-FRDVFDSDDDLKLFIETILPVRG 2472

Query: 358  DQKVTAKLDEFSS-YNDTLESPSTVNNLAYASSILNRTSLVLEYLDRSMIKMNESKDLTV 416
               + A L+E S  +    + P+    L   S    ++S     ++RS I++ +SK   +
Sbjct: 2473 GPNLAAALEEASMIFKKDTKRPNAKKILVIISD--KKSSNSPAEIERSAIQLEKSKIKVI 2530

Query: 417  RDKIG 421
               IG
Sbjct: 2531 SLAIG 2535


>SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)
          Length = 815

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 17/63 (26%), Positives = 28/63 (44%)

Query: 275 KSLKAILCDYLPMETIPKMDNVLIHKRSPYHKLNGIIIVFNDKYTLEEVRFDVTAYSRTP 334
           KS +   CDY        ++ +L   +  Y++L+  +I    K T +EVR    AY   P
Sbjct: 82  KSTRDHFCDYSVAAESIDLEKLLQKVQDAYYRLHPHLIYLKPKVTAKEVRTKYKAYDPLP 141

Query: 335 SQV 337
             +
Sbjct: 142 VSI 144


>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 19/72 (26%), Positives = 33/72 (45%)

Query: 58  ICSLLLDNTSGPYSIKMLRNPEADLFYLVQTREDFFVLSRKETLKVIKRISSVEKYEIDD 117
           + +LLLDN  G Y +        ++F  + +R D  +L  +E L   +   + E+  +D 
Sbjct: 287 LANLLLDNPHGGYPVVQQVESGVEVFVGMISRNDISILLSREDLFSSRENLTAEEESVDV 346

Query: 118 TKCTGRIQLKVY 129
           TK    +  K Y
Sbjct: 347 TKLDYYLMNKGY 358


>SB_42180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 274 LKSLKAILCDYLPMETIPKMDNVLIHKRSPYHKLNGIIIVFNDKYTLEEVRFDVTAYSRT 333
           L  LK  L D+  + T+ +    L+ KRSPYH     ++ +  K TL  +R     Y+  
Sbjct: 20  LTPLKKSLVDFTWIRTLAR----LLEKRSPYHLAIAPLLRYEGKTTLSLIRLGKQGYTLV 75

Query: 334 PS 335
            S
Sbjct: 76  TS 77


>SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22)
          Length = 1709

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 42 ICSNS-GEIQEFYQRDLICSLLLDNTSGPYSI---KMLRNPEADLFYLVQT 88
          IC++S   I EF   D I ++++DN++G   I    +L   EADL  LV T
Sbjct: 20 ICNSSCTAISEFVSHDKITNIVVDNSTGNVFIGGTNILVKTEADLEVLVNT 70


>SB_8606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 42  ICSNS-GEIQEFYQRDLICSLLLDNTSGPYSI---KMLRNPEADLFYLVQT 88
           IC++S   I EF   D I ++++DN++G   I    +L   EADL  LV T
Sbjct: 66  ICNSSCTAISEFVSHDKITNIVVDNSTGNVFIGGTNILVKTEADLEVLVNT 116


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 8    PEITR--LVPASIVNN---VSSFVFYDNHPRDQKLMDIVICSNSGEIQEFYQRDLICSLL 62
            P IT   L+  S V N    +S VF    P   +L+  +  S S  +     R+   +++
Sbjct: 1247 PNITSYPLLTTSAVGNFTSATSVVFDSTTPNATRLVPSISASISPNVTINMTREANSTMI 1306

Query: 63   LDNTSGPYSIKMLRNPEA 80
            L +TS PY+  ++  P A
Sbjct: 1307 LPSTSVPYNTTLIPGPNA 1324


>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1665

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 246  HDVLAAITS-TVKTDLILRLIKAEIKQDFLKSLKAILCDYL----PMETIPKMDNVLIHK 300
            H V   IT  T+        I A + Q  L S    +C ++    PM  + K +  L+  
Sbjct: 934  HQVFINITEETLNEGEYFANISAGMDQTVLLSGPVQVCRFVNCSSPMIALQKDEYDLLKN 993

Query: 301  RSPYHKLNGIIIVFNDKYTLEEVRFDVTAYSR 332
            RS +HK +G +    D   +    F  T++SR
Sbjct: 994  RSVFHKASGTMHKRKDYLNINNTVFICTSFSR 1025


>SB_25623| Best HMM Match : THAP (HMM E-Value=0.00058)
          Length = 538

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 428 ACGQTDYNKFRAKMSELGAKGVIKMLGDDDNSDNEIEVNSD 468
           ACG T Y  F +  +E G + V+  + D   S  + EV S+
Sbjct: 170 ACGSTSYEYFDSDETEKGIQTVVHEMIDRSTSTEDFEVVSE 210


>SB_21188| Best HMM Match : Calponin (HMM E-Value=0.37)
          Length = 132

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 391 LNRTSLVLEYLDRSMIKMNESKD-LTVRDKIGKVIDLLACGQTDYNKFRAKMSELGAKGV 449
           LN  +L+LE +   M   N+SK  L    ++ K+I+ L C   + NK +A + +     +
Sbjct: 6   LNEFTLILEDISLLMTNKNQSKQILAAYGRVKKIIEALNC--NNKNKVQADIDDASLSDL 63

Query: 450 IKMLGDD 456
              L +D
Sbjct: 64  PSTLIED 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.135    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,345,634
Number of Sequences: 59808
Number of extensions: 578968
Number of successful extensions: 1693
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1673
Number of HSP's gapped (non-prelim): 31
length of query: 468
length of database: 16,821,457
effective HSP length: 85
effective length of query: 383
effective length of database: 11,737,777
effective search space: 4495568591
effective search space used: 4495568591
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)