GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001919-TA|BGIBMGA001919-PA|undefined
         (468 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M84741-1|AAA52010.1|  690|Homo sapiens cGMP-gated cation channel...    33   2.1  

>M84741-1|AAA52010.1|  690|Homo sapiens cGMP-gated cation channel
           protein protein.
          Length = 690

 Score = 33.1 bits (72), Expect = 2.1
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 200 KNQGISDNPQPKCVKEMSEFKLKLKSPWVKYCNKKVVIAIDTS-NHYHDVLAAITSTVK- 257
           KN+  +D  + K  K+  + K + KS   K  +KK V+ ID S N Y++ L  IT  V  
Sbjct: 119 KNENKNDPEKKKKKKDKEKKKKEEKSKDKKEHHKKEVVVIDPSGNTYYNWLFCITLPVMY 178

Query: 258 --TDLILRLIKAEIKQDFLK 275
             T +I R    E++ D+L+
Sbjct: 179 NWTMVIARACFDELQSDYLE 198


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.135    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,816,704
Number of Sequences: 224733
Number of extensions: 2137274
Number of successful extensions: 4804
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4804
Number of HSP's gapped (non-prelim): 1
length of query: 468
length of database: 73,234,838
effective HSP length: 93
effective length of query: 375
effective length of database: 52,334,669
effective search space: 19625500875
effective search space used: 19625500875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 67 (31.1 bits)