GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001919-TA|BGIBMGA001919-PA|undefined
         (468 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2411|AAF49717.2| 1333|Drosophila melanogaster CG17177-P...    35   0.28 
AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein.      31   2.6  
AE014297-3559|AAF56305.1|  737|Drosophila melanogaster CG13617-P...    30   7.8  
AE013599-1483|AAF58514.3|  467|Drosophila melanogaster CG13157-P...    30   7.8  

>AE014296-2411|AAF49717.2| 1333|Drosophila melanogaster CG17177-PA
           protein.
          Length = 1333

 Score = 34.7 bits (76), Expect = 0.28
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 162 VVELQSKLSEAKYNLECNEKTYRELVNLRQMASYSIYQKNQGISDNPQPKCVKEMSEFKL 221
           V EL+ K+  A  NL+  ++T  + + L +   +  Y      S N   K  K+  EF+L
Sbjct: 463 VKELERKVYRAVLNLDALKETQYDFIKLMESTKHLKY------SPNEMEKLRKDFEEFRL 516

Query: 222 KLKSPWVKYCNKKVVIAIDTSNHYHDVLAAITSTVKTDL 260
           K+    V Y  KK+      +      L  I + V+ D+
Sbjct: 517 KILRQLVDYDQKKIQEPSTDARQREIRLQKIHANVRQDM 555


>AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein.
          Length = 1003

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 199 QKNQGISDNPQPKCVKEMSEFKLKLKSPWVKYCNKKVVIAIDTSNHYHDVLAAITSTVKT 258
           +K + IS+ P P  VKE+  F L + S + K+      +A   +N    + A I S+  +
Sbjct: 341 KKVRAISEMPPPTSVKELKRF-LGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSS 399

Query: 259 DLILRLIKAEIKQDFLKSLKAILC 282
            + + L +  + Q F   LK+ILC
Sbjct: 400 KVPITLDETAL-QSF-NDLKSILC 421


>AE014297-3559|AAF56305.1|  737|Drosophila melanogaster CG13617-PA
           protein.
          Length = 737

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 181 KTYRELVNLRQMASYSIYQKNQGISDNPQPKCVKEMSEFKLKLK 224
           K  R++VN R++ S+    K++GIS N   +   E++E + KLK
Sbjct: 546 KDARKMVN-RKLMSHGFDMKSKGISHNSLKRVNSELTEHRNKLK 588


>AE013599-1483|AAF58514.3|  467|Drosophila melanogaster CG13157-PA
           protein.
          Length = 467

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 354 ITTADQKVTAKLDEFSSYNDTLESPSTVNNLAYASSI-LNRTSLVLEYLDRS 404
           I   D+ V+  +DE+  Y D+L S    + L+   ++ LN T + + Y DR+
Sbjct: 309 IDRRDESVSDPVDEYKYYEDSLNSAQMHSELSVPETVPLNITRVGIPYEDRN 360


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.318    0.135    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,535,840
Number of Sequences: 52641
Number of extensions: 817163
Number of successful extensions: 1790
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1789
Number of HSP's gapped (non-prelim): 4
length of query: 468
length of database: 24,830,863
effective HSP length: 88
effective length of query: 380
effective length of database: 20,198,455
effective search space: 7675412900
effective search space used: 7675412900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)