GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001919-TA|BGIBMGA001919-PA|undefined
         (468 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   2.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   4.1  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   5.5  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 344 IYDAVPFKILITTADQKVTAKLDE--FSSYNDTLESPSTVNNLAYASSILNRTSLVLEYL 401
           I+D +  K L  +A + +   L+   F + ND  E  + +  +    +++       +++
Sbjct: 58  IWDQMTVKELANSAKRDINDVLNVLYFINKNDKYEENTILTTMPLLINVVKYLGGKHKFI 117

Query: 402 DRSMIKMNESKDLTVR 417
            + + K  E+KD+T R
Sbjct: 118 SKKIKKTMENKDITKR 133


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 412 KDLTVRDKIGKVIDLLACG 430
           K+L +RDK   ++D +A G
Sbjct: 313 KNLDIRDKKAAIVDFIAAG 331


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 39 DIVICSNSGEIQEFYQRDLI 58
          + V C N+GE + +Y++ L+
Sbjct: 39 ECVFCRNNGEEEAYYRKHLL 58


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,076
Number of Sequences: 429
Number of extensions: 5659
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 3
length of query: 468
length of database: 140,377
effective HSP length: 60
effective length of query: 408
effective length of database: 114,637
effective search space: 46771896
effective search space used: 46771896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)