GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001919-TA|BGIBMGA001919-PA|undefined
         (468 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69040.2 68414.m07899 ACT domain containing protein (ACR4) lo...    32   0.71 
At1g69040.1 68414.m07900 ACT domain containing protein (ACR4) lo...    32   0.71 
At3g42910.1 68416.m04500 expressed protein ; expression supporte...    31   1.6  
At3g53680.1 68416.m05928 PHD finger transcription factor, putati...    31   2.2  
At2g31690.1 68415.m03868 lipase class 3 family protein similar t...    30   2.9  
At5g49110.1 68418.m06079 expressed protein  ; expression support...    30   3.8  
At2g39040.1 68415.m04799 peroxidase, putative similar to cationi...    29   5.0  

>At1g69040.2 68414.m07899 ACT domain containing protein (ACR4) low
           similarity to uridylyltransferase [Gluconacetobacter
           diazotrophicus] GI:17226253; contains Pfam profile
           PF01842: ACT domain
          Length = 455

 Score = 32.3 bits (70), Expect = 0.71
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 206 DNPQPKCVKEMSEFKLKLKSPWVKYCNKKVVIAIDTSNHYHDVLAAITSTVKTDLILRLI 265
           DN   K ++ M+  ++ + +     C K  VI +D++N Y  +L  +   + TDL L + 
Sbjct: 12  DNEYEKLIRRMNPPRVVIDND---SCKKATVIRVDSANEYGILLEVV--QILTDLNLTIT 66

Query: 266 KAEIKQD 272
           KA I  D
Sbjct: 67  KAYISSD 73


>At1g69040.1 68414.m07900 ACT domain containing protein (ACR4) low
           similarity to uridylyltransferase [Gluconacetobacter
           diazotrophicus] GI:17226253; contains Pfam profile
           PF01842: ACT domain
          Length = 451

 Score = 32.3 bits (70), Expect = 0.71
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 206 DNPQPKCVKEMSEFKLKLKSPWVKYCNKKVVIAIDTSNHYHDVLAAITSTVKTDLILRLI 265
           DN   K ++ M+  ++ + +     C K  VI +D++N Y  +L  +   + TDL L + 
Sbjct: 8   DNEYEKLIRRMNPPRVVIDND---SCKKATVIRVDSANEYGILLEVV--QILTDLNLTIT 62

Query: 266 KAEIKQD 272
           KA I  D
Sbjct: 63  KAYISSD 69


>At3g42910.1 68416.m04500 expressed protein ; expression supported
           by MPSS
          Length = 649

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 351 KILITTADQKVTAKLDEFSSYNDTLESPSTVNNLAYASSILNRTSLVLEYLDRSMIKMNE 410
           K+L+       TA LD    +N +L+    ++++A    +      +LE++DR   K   
Sbjct: 399 KLLVGHPSPNATASLDPKERFNCSLKKLKAISSIALVGDVTMNNKDILEFVDR---KTFT 455

Query: 411 SKDLTVRDKIGKVIDLLACGQTDYNKFR 438
           +K +    K  +   +L  G+ D NK R
Sbjct: 456 NKVMDGLLKFSR--HVLQTGEVDGNKLR 481


>At3g53680.1 68416.m05928 PHD finger transcription factor, putative
           predicted proteins, Arabidopsis thaliana
          Length = 839

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 6   LRPEITRLVPASIVNNVSSFVFYDNHPRDQKLMDIV-ICSNSGEIQEFYQRDLICSLLLD 64
           ++ EI+  VP+ +V+N SSF    ++P      D V  CS S E     +    CS L +
Sbjct: 52  MKSEISNPVPSPVVDNASSFRDITSNPAKSSSGDRVGSCSGSYETITDEKHSEYCSSLAN 111

Query: 65  NTSGPYSIK 73
           + + P S +
Sbjct: 112 SDAVPSSFE 120


>At2g31690.1 68415.m03868 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile PF01764: Lipase
          Length = 484

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 175 NLEC--NEKTYRELVNLRQMASYSIYQKNQGISDNPQPKCVKEMSEFKLKLKSPWVKYCN 232
           N+ C  + +TY +L+N R+  S S+       SDN   + +K   E  + LK   + Y +
Sbjct: 406 NISCVHDLQTYIDLLNQRRTNSRSVDSDEDEDSDNVALEFLKTNGEKMMFLKRQRMMYWS 465

Query: 233 KKVVIAIDTSNH 244
             V +    SNH
Sbjct: 466 NAVDLLFSFSNH 477


>At5g49110.1 68418.m06079 expressed protein  ; expression supported
           by MPSS
          Length = 1487

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 385 AYASSILNRTSLVLEYLDRSMIKMNESKDLTVRDKIGKVIDLLACGQTDYNKFRAKMSEL 444
           +Y   IL    ++L Y+   + K  E K  +VR +I  +IDL    + D  K  +K S +
Sbjct: 763 SYCLIILGIVQVLLNYIIVDLEKQPEGKKGSVRKEIVDLIDLYESLEKDVGK--SKQSNV 820

Query: 445 GAKGVIKMLGDDDNSDNEI 463
           G +       D D  +  I
Sbjct: 821 GKRVRFSACNDTDLGNTSI 839


>At2g39040.1 68415.m04799 peroxidase, putative similar to cationic
           peroxidase isozyme 38K precursor [Nicotiana tabacum]
           gi|575603|dbj|BAA07663
          Length = 350

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 385 AYASSILNRTSLVLEYLDRSMIKMNESKDLTVRDKIGKV 423
           A+ +S+   +   L    RSMIKM+  K LT+ D+ G++
Sbjct: 304 AHIASVFQNSGAFLAQFGRSMIKMSSIKVLTLGDQGGEI 342


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.135    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,116,593
Number of Sequences: 28952
Number of extensions: 406549
Number of successful extensions: 1070
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1067
Number of HSP's gapped (non-prelim): 7
length of query: 468
length of database: 12,070,560
effective HSP length: 84
effective length of query: 384
effective length of database: 9,638,592
effective search space: 3701219328
effective search space used: 3701219328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)