GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001918-TA|BGIBMGA001918-PA|IPR001096|Peptidase C13,
legumain
         (264 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)        193   1e-49
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.32 
SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_51928| Best HMM Match : HEAT (HMM E-Value=4.9e-22)                  29   3.9  

>SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)
          Length = 1008

 Score =  193 bits (470), Expect = 1e-49
 Identities = 91/153 (59%), Positives = 112/153 (73%)

Query: 69  LIYLTGHGGDGFLKFQDSEEVTSQELADALEQMWQKKRYNEIFFIIDTCQASSMYEKFYS 128
           +++  GHGGDGFLKFQD+EEVTS ELADA EQMWQK+RY+E+F ++DTCQA SM  + YS
Sbjct: 132 ILFSPGHGGDGFLKFQDAEEVTSVELADAFEQMWQKQRYHELFLMVDTCQAYSMASRLYS 191

Query: 129 PNILATASSLVGEDSLSHHVDSAIGVYIIDRYTYYVLEFLENVHPNSKRTMSEFLAVCPK 188
           PN+LA  SSLVGEDSLSHH D +IGV++IDRYTYYVL+FLE V P+S+ T+ +       
Sbjct: 192 PNLLAVGSSLVGEDSLSHHDDPSIGVHVIDRYTYYVLQFLEKVRPDSEATIGDLFRYTKP 251

Query: 189 SACLSTVGVRKDLFNRDPSKVPITDFFGSVRPV 221
           S  +ST   R DLF R+  KV I  F   V  V
Sbjct: 252 SLVISTPRARTDLFTRNVDKVRIDLFTRDVGEV 284



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 16/25 (64%), Positives = 23/25 (92%)

Query: 12  TIFNSAHEQINVYGDDVEVDYRGYE 36
           T++N+ ++ IN+YGDDVEVDYRGY+
Sbjct: 103 TVYNNVNQHINLYGDDVEVDYRGYD 127


>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1902

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 70  IYLTGHGGDGFLKFQDSEE-VTSQELADALEQMWQKKRYNEIFFIIDTCQASSMYEKFYS 128
           +Y  G+GG  F  F  S   + +QE  D +  +++ +R+N I    D    S  YE F  
Sbjct: 656 VYSGGYGGGIFPGFASSTSCIYNQEDCD-IHYIYENQRWNPIEGFSDRTPFSMDYELFVQ 714

Query: 129 PNILATA----SSLVGEDSLSHHVDSAI 152
             I+       S L G+DSL H  +S +
Sbjct: 715 HPIVEALHEDDSVLHGDDSLLHEDESVL 742


>SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 73  TGHGGDGFLKFQDSEEVTSQELADALEQMWQKKRYNEIFFIIDT---CQASSMYEKFYSP 129
           +G GGD +L+ +D  E   +++AD  +Q+   K  NE+    +     QA+S    +YS 
Sbjct: 188 SGEGGD-YLQLKDENERLHRQVADLQKQISDLKATNEVLLEQNARYRNQANSASSSYYSG 246

Query: 130 NILATASSLVGEDS 143
           +    +SS    D+
Sbjct: 247 SKSPASSSYPPRDT 260


>SB_51928| Best HMM Match : HEAT (HMM E-Value=4.9e-22)
          Length = 1115

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 1   MACNPRNPRPATIFNSAHEQINVYGDDVEVDYRGYEVSVENFIRLL--TGRVPPDTPRSK 58
           +A     P P  + +   EQ+  Y  + E+D R   +S +   +L    G    D P   
Sbjct: 235 LAMQMHTPTPGQLVSMTPEQMQAYRWEREIDERNRVLSDDELNQLFPKEGYKILDPPPGY 294

Query: 59  QLLTDEGSNILIYLTGHGGDGFLKFQD 85
           Q +   G  +    T  GG GF   Q+
Sbjct: 295 QPIRTPGRKLTATPTPMGGQGFYMQQE 321


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,553,783
Number of Sequences: 59808
Number of extensions: 330007
Number of successful extensions: 658
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 8
length of query: 264
length of database: 16,821,457
effective HSP length: 81
effective length of query: 183
effective length of database: 11,977,009
effective search space: 2191792647
effective search space used: 2191792647
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)