GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001917-TA|BGIBMGA001917-PA|IPR013017|NHL,
IPR011044|Quinoprotein amine dehydrogenase, beta chain-like,
IPR001258|NHL repeat
         (492 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   8.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   8.5  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/32 (25%), Positives = 18/32 (56%)

Query: 253 IAFMKSQGEIYVTDKWKHCIHVFSKDGLYLRS 284
           IA +K + +I    +W  C++++   G  L++
Sbjct: 655 IAHLKDKKKIRAKKRWSQCMYMYFLLGFRLQA 686


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/32 (25%), Positives = 18/32 (56%)

Query: 253 IAFMKSQGEIYVTDKWKHCIHVFSKDGLYLRS 284
           IA +K + +I    +W  C++++   G  L++
Sbjct: 655 IAHLKDKKKIRAKKRWSQCMYMYFLLGFRLQA 686


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,624
Number of Sequences: 317
Number of extensions: 4948
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 492
length of database: 114,650
effective HSP length: 59
effective length of query: 433
effective length of database: 95,947
effective search space: 41545051
effective search space used: 41545051
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)