BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001917-TA|BGIBMGA001917-PA|IPR013017|NHL, IPR011044|Quinoprotein amine dehydrogenase, beta chain-like, IPR001258|NHL repeat (492 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 36 0.010 SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 32 0.21 SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 31 0.28 SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 29 1.5 SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb... 29 1.9 SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 29 1.9 SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 28 2.6 SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 28 3.4 SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 27 4.5 SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 27 4.5 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 5.9 SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 27 7.8 SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 7.8 SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 27 7.8 SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 7.8 >SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 551 Score = 36.3 bits (80), Expect = 0.010 Identities = 42/192 (21%), Positives = 94/192 (48%), Gaps = 22/192 (11%) Query: 7 CGVCWSQHLDDMRTQIGSILKQL--DSATNRLNHKIEHFKDRCERITEQINKTAEDKINA 64 C + Q +++ + + S ++ +S+ N++ K+E FK+ + + ++I + + Sbjct: 64 CVEYFRQRKEELESHVDSEIETSKDESSVNKVEEKVEEFKE--DNVEQEIKQK-----RS 116 Query: 65 IIDSKNNMLIEAVSLQKSGDMSALALKTSLEEAKTVASKAMTVSDGVNIDGEQQVTTFMN 124 + +S ++E VS +K A + S E +T+ ++ + + G+ + TT + Sbjct: 117 LSESPQESMLEKVS-KKPKVSEAHNEEISPENVETIENEL-----DLPVKGKDEQTTGL- 169 Query: 125 LHQNAIQLLT-DVIKWDT-EGFVFDKENFTLEVDSTTPVDAES---EDPVSEGSKHNDPL 179 +++NA LLT ++ + + F ++++ L VDS D S P ++ HN P Sbjct: 170 VYKNANDLLTGSLLSFIVDDSFSYEQKKKLLCVDSFPTSDVRSLVAGTPATDDFSHNKP- 228 Query: 180 ESEESLVTYYRS 191 ++ S+ T+Y S Sbjct: 229 NNQISISTFYSS 240 >SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||Manual Length = 468 Score = 31.9 bits (69), Expect = 0.21 Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Query: 28 QLDSATNRLNHKIEHFKDRCERITEQINKTAEDKINAIIDSKNN 71 Q+DSA +L +I HFK++ + +T+Q + A+ +I +++K N Sbjct: 394 QVDSAVEQLKSRIAHFKEQQDSVTKQRIEKAKQEIEK-LEAKYN 436 >SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1194 Score = 31.5 bits (68), Expect = 0.28 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 12 SQHLDDMRTQIGSILKQLDSATNRLNHKIEHFKDRCERITEQ-INKTAEDKINAIIDSKN 70 S+ +D++ I L++L+ N L + H KD R E I D+IN+++D+ Sbjct: 186 SEKIDELLQYIEERLRELEEEKNDL--AVYHKKDNERRCLEYAIYSREHDEINSVLDALE 243 Query: 71 NMLIEAVSLQKSGDMSALALKTSLEEAKTVASKAMTVSDGVNIDGEQQVTTFMNLHQNAI 130 I A+ + + + +E K ++ + + ++ +Q + N+ ++ + Sbjct: 244 QDRIAALERNDDDSGAFIQREERIERIKAEITELNHSLELLRVEKQQNDEDYTNIMKSKV 303 Query: 131 QL 132 L Sbjct: 304 AL 305 >SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 997 Score = 29.1 bits (62), Expect = 1.5 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%) Query: 59 EDKINAI-IDSKNNMLIEAVSLQKSGDMSALALKTSLEEAKTVASKAMTVSDGVNIDGEQ 117 ED IN+ + SKNN +EAV+ + S + LE + + K +T D V++ Sbjct: 750 EDDINSPKLQSKNNQTVEAVNTETSDKLQEKEANHELENIEKIEEK-LTEVDKVSLSDAF 808 Query: 118 QVTTFMNLHQNAIQLLTDVIKWDTEGFVFDKENFTLEVDSTTPVDAESEDPVSEGS 173 N + ++Q T + +T +KE ++D+ + D E+ E S Sbjct: 809 PDQEIKN-SRTSVQNGTRSVSKNTP----EKETKVDKIDNVSKKDVETSPGSCETS 859 >SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pombe|chr 1|||Manual Length = 376 Score = 28.7 bits (61), Expect = 1.9 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 436 DSGNCRVQVFKPTGQLVRVFGGFGTQPGKFGWISGIHVTKHLDIIICDTKNHTVNF 491 D+ V V K TG+ +F GTQ + S +H H IICD + H N+ Sbjct: 62 DTRKLEVYVAKLTGKEAALFVTSGTQGNQLCIRSHLHQPPH--SIICDDRAHIYNW 115 >SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr 2|||Manual Length = 2386 Score = 28.7 bits (61), Expect = 1.9 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 10/85 (11%) Query: 85 MSALALKTSLEEAKTVASKAMTVS----DGVNIDGEQQVTTFMNLHQNAIQLLTDVIK-- 138 ++ + ++ LE K + + ++ DG+N G+Q+ T+F+++ + L ++ Sbjct: 1282 LNVILTESELEVNKVIEEFQLVINQPGPDGLNSVGQQRYTSFVDVFFKIVDYLNKWLRMR 1341 Query: 139 ----WDTEGFVFDKENFTLEVDSTT 159 WD + KEN + V+ T Sbjct: 1342 KKRNWDRRSAIARKENRYMSVEDAT 1366 >SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 535 Score = 28.3 bits (60), Expect = 2.6 Identities = 10/31 (32%), Positives = 14/31 (45%) Query: 196 PHYVWRKTSRPSGVGLSPWDSHLYVCGMDSH 226 P YVW++ + + PW L G SH Sbjct: 357 PLYVWQQNAAVKALSFCPWQRSLLATGAGSH 387 >SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 715 Score = 27.9 bits (59), Expect = 3.4 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 297 SPEGIATDNANNLIYVADTGNDRVQIILKPKSGIILLQIIQPDGK-FVDQIGVYNKLKPT 355 +P G+ T NNL ++ R Q K G+ + + PD + F D IG NK+ P Sbjct: 26 APHGMNT-RGNNLSSMSKNTGQRKQRS-KSIHGLPVAPVFYPDKEEFQDSIGYINKIAPI 83 Query: 356 G 356 G Sbjct: 84 G 84 >SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosaccharomyces pombe|chr 1|||Manual Length = 441 Score = 27.5 bits (58), Expect = 4.5 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Query: 25 ILKQLDSATNRLNH-------KIEHFKDRCERITEQINKTAEDKINAIIDS-KNNMLIEA 76 +LKQL +A +L H K+E K R + I E+ +++ I ++ K N +IE Sbjct: 336 LLKQLSNAQEKLEHEQHSRNQKLEAAKQRMDNIREEYKVITQERNKKIQETEKKNAMIEM 395 Query: 77 VSLQKSG 83 + +G Sbjct: 396 TEQKIAG 402 >SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1183 Score = 27.5 bits (58), Expect = 4.5 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Query: 364 KEVICTELNTPTAVALTADRIIILDSGNRRVKVYNKNDKGKILEFGSTGQRKGQFRQPEV 423 KE +L PT+V + A R I + +V +Y+K +G + F S G QF Sbjct: 1023 KEFFKLQLKPPTSVQIKALRQFIASAYIDQVALYDKEKRGYVTLFPS-GSEVVQFVPDRT 1081 Query: 424 LAVDP--MGYILVGDSGNCRV 442 +D + Y+ + +S + RV Sbjct: 1082 YNIDSEYVVYLSLHESRSGRV 1102 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 27.1 bits (57), Expect = 5.9 Identities = 17/88 (19%), Positives = 39/88 (44%) Query: 18 MRTQIGSILKQLDSATNRLNHKIEHFKDRCERITEQINKTAEDKINAIIDSKNNMLIEAV 77 MRT+ GS+ K + + ++N ++ + TEQ A + I + K + I+ Sbjct: 92 MRTETGSMAKAHEEVSQQINTELRNKIREYIDQTEQQKVVAANAIEELYQKKTALEIDLS 151 Query: 78 SLQKSGDMSALALKTSLEEAKTVASKAM 105 + + + S L + + + K + + + Sbjct: 152 EKKDAYEYSCNKLNSYMRQTKKMTGREL 179 >SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Manual Length = 899 Score = 26.6 bits (56), Expect = 7.8 Identities = 41/191 (21%), Positives = 86/191 (45%), Gaps = 20/191 (10%) Query: 11 WSQHLDDMRTQIGSILKQLDSATNRLNHKIEHFKDRCE---RITEQINKTAEDKINAIID 67 W ++++ I S++ QL+S N I K++ E ++ E K E ++ + Sbjct: 648 WKSEESELKSSIESLISQLESIRNS-QIDIAFSKNQLELKLQLYETKLKEYEQHLSCVNI 706 Query: 68 SKNNMLIEAVSLQKSGDMSALALKTSLEEAKTVASKAMTVSDGVNIDGEQQVTTFMNLHQ 127 SK + + + + M + + ++ E + + S+ + E + NLH Sbjct: 707 SKKQVSSSSDTSFGNTKMDSSMILSNSEAVSDEQERELIESEKHRMKLESE-----NLH- 760 Query: 128 NAIQLLTDVIKWDTEGF--VFDKENFTLEVDSTTPVDA-ESEDPV-----SEGSKHNDPL 179 +Q +++K D E V++ + F LE ++ +A E +PV ++ SK ++ Sbjct: 761 --LQANIELLKKDLEAINVVYEAKIFDLEKRLSSEANAPELHNPVNLNYDAQLSKISEIK 818 Query: 180 ESEESLVTYYR 190 E+ + L+T YR Sbjct: 819 ENYDELLTRYR 829 >SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1727 Score = 26.6 bits (56), Expect = 7.8 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 7/94 (7%) Query: 16 DDMRTQ--IGSILKQLDSATNRLNHKIEHFKDRCERITEQINKTAEDKI-----NAIIDS 68 D+M+ Q + S+ QLD TN+ + E K R + +Q ++ + I + +++ Sbjct: 392 DNMKLQQKVSSLKLQLDRLTNKFSSFCEQVKQRIPVVKQQRSEIVRNNIYMNFLSESLET 451 Query: 69 KNNMLIEAVSLQKSGDMSALALKTSLEEAKTVAS 102 NN L + + S M A L ++T S Sbjct: 452 SNNNLTKVQAELLSTKMRQEACYLQLTASRTQCS 485 >SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 764 Score = 26.6 bits (56), Expect = 7.8 Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 147 DKENFTLEVDSTTPVDAESEDPVSEGSKHND 177 D++N T E + + E P EGS H+D Sbjct: 361 DEDNNTDEANEDAQSNVSDESPKGEGSSHSD 391 >SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1522 Score = 26.6 bits (56), Expect = 7.8 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Query: 126 HQNAIQLLTDVIKWDTEGFVFD----KENFTLEVDSTTPVDAESEDPVSEGSKHNDPLES 181 + N ++LL DV+K G + KE++ E TP +E ++ +SE +++D S Sbjct: 910 NNNGLRLLKDVLKKTYRGARENRSSVKEDYVSESTERTPDASEIDEHISEHEENDDESSS 969 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.135 0.400 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,274,658 Number of Sequences: 5004 Number of extensions: 98502 Number of successful extensions: 313 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 306 Number of HSP's gapped (non-prelim): 16 length of query: 492 length of database: 2,362,478 effective HSP length: 76 effective length of query: 416 effective length of database: 1,982,174 effective search space: 824584384 effective search space used: 824584384 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 56 (26.6 bits)
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