SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001917-TA|BGIBMGA001917-PA|IPR013017|NHL,
IPR011044|Quinoprotein amine dehydrogenase, beta chain-like,
IPR001258|NHL repeat
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    36   0.010
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    32   0.21 
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    31   0.28 
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    29   1.5  
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    29   1.9  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    29   1.9  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    28   2.6  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    28   3.4  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    27   4.5  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   4.5  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   5.9  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    27   7.8  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   7.8  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   7.8  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   7.8  

>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 36.3 bits (80), Expect = 0.010
 Identities = 42/192 (21%), Positives = 94/192 (48%), Gaps = 22/192 (11%)

Query: 7   CGVCWSQHLDDMRTQIGSILKQL--DSATNRLNHKIEHFKDRCERITEQINKTAEDKINA 64
           C   + Q  +++ + + S ++    +S+ N++  K+E FK+  + + ++I +       +
Sbjct: 64  CVEYFRQRKEELESHVDSEIETSKDESSVNKVEEKVEEFKE--DNVEQEIKQK-----RS 116

Query: 65  IIDSKNNMLIEAVSLQKSGDMSALALKTSLEEAKTVASKAMTVSDGVNIDGEQQVTTFMN 124
           + +S    ++E VS +K     A   + S E  +T+ ++       + + G+ + TT + 
Sbjct: 117 LSESPQESMLEKVS-KKPKVSEAHNEEISPENVETIENEL-----DLPVKGKDEQTTGL- 169

Query: 125 LHQNAIQLLT-DVIKWDT-EGFVFDKENFTLEVDSTTPVDAES---EDPVSEGSKHNDPL 179
           +++NA  LLT  ++ +   + F ++++   L VDS    D  S     P ++   HN P 
Sbjct: 170 VYKNANDLLTGSLLSFIVDDSFSYEQKKKLLCVDSFPTSDVRSLVAGTPATDDFSHNKP- 228

Query: 180 ESEESLVTYYRS 191
            ++ S+ T+Y S
Sbjct: 229 NNQISISTFYSS 240


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 28  QLDSATNRLNHKIEHFKDRCERITEQINKTAEDKINAIIDSKNN 71
           Q+DSA  +L  +I HFK++ + +T+Q  + A+ +I   +++K N
Sbjct: 394 QVDSAVEQLKSRIAHFKEQQDSVTKQRIEKAKQEIEK-LEAKYN 436


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 12  SQHLDDMRTQIGSILKQLDSATNRLNHKIEHFKDRCERITEQ-INKTAEDKINAIIDSKN 70
           S+ +D++   I   L++L+   N L   + H KD   R  E  I     D+IN+++D+  
Sbjct: 186 SEKIDELLQYIEERLRELEEEKNDL--AVYHKKDNERRCLEYAIYSREHDEINSVLDALE 243

Query: 71  NMLIEAVSLQKSGDMSALALKTSLEEAKTVASKAMTVSDGVNIDGEQQVTTFMNLHQNAI 130
              I A+        + +  +  +E  K   ++     + + ++ +Q    + N+ ++ +
Sbjct: 244 QDRIAALERNDDDSGAFIQREERIERIKAEITELNHSLELLRVEKQQNDEDYTNIMKSKV 303

Query: 131 QL 132
            L
Sbjct: 304 AL 305


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 59  EDKINAI-IDSKNNMLIEAVSLQKSGDMSALALKTSLEEAKTVASKAMTVSDGVNIDGEQ 117
           ED IN+  + SKNN  +EAV+ + S  +        LE  + +  K +T  D V++    
Sbjct: 750 EDDINSPKLQSKNNQTVEAVNTETSDKLQEKEANHELENIEKIEEK-LTEVDKVSLSDAF 808

Query: 118 QVTTFMNLHQNAIQLLTDVIKWDTEGFVFDKENFTLEVDSTTPVDAESEDPVSEGS 173
                 N  + ++Q  T  +  +T     +KE    ++D+ +  D E+     E S
Sbjct: 809 PDQEIKN-SRTSVQNGTRSVSKNTP----EKETKVDKIDNVSKKDVETSPGSCETS 859


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 436 DSGNCRVQVFKPTGQLVRVFGGFGTQPGKFGWISGIHVTKHLDIIICDTKNHTVNF 491
           D+    V V K TG+   +F   GTQ  +    S +H   H   IICD + H  N+
Sbjct: 62  DTRKLEVYVAKLTGKEAALFVTSGTQGNQLCIRSHLHQPPH--SIICDDRAHIYNW 115


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 85   MSALALKTSLEEAKTVASKAMTVS----DGVNIDGEQQVTTFMNLHQNAIQLLTDVIK-- 138
            ++ +  ++ LE  K +    + ++    DG+N  G+Q+ T+F+++    +  L   ++  
Sbjct: 1282 LNVILTESELEVNKVIEEFQLVINQPGPDGLNSVGQQRYTSFVDVFFKIVDYLNKWLRMR 1341

Query: 139  ----WDTEGFVFDKENFTLEVDSTT 159
                WD    +  KEN  + V+  T
Sbjct: 1342 KKRNWDRRSAIARKENRYMSVEDAT 1366


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 196 PHYVWRKTSRPSGVGLSPWDSHLYVCGMDSH 226
           P YVW++ +    +   PW   L   G  SH
Sbjct: 357 PLYVWQQNAAVKALSFCPWQRSLLATGAGSH 387


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 297 SPEGIATDNANNLIYVADTGNDRVQIILKPKSGIILLQIIQPDGK-FVDQIGVYNKLKPT 355
           +P G+ T   NNL  ++     R Q   K   G+ +  +  PD + F D IG  NK+ P 
Sbjct: 26  APHGMNT-RGNNLSSMSKNTGQRKQRS-KSIHGLPVAPVFYPDKEEFQDSIGYINKIAPI 83

Query: 356 G 356
           G
Sbjct: 84  G 84


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 25  ILKQLDSATNRLNH-------KIEHFKDRCERITEQINKTAEDKINAIIDS-KNNMLIEA 76
           +LKQL +A  +L H       K+E  K R + I E+     +++   I ++ K N +IE 
Sbjct: 336 LLKQLSNAQEKLEHEQHSRNQKLEAAKQRMDNIREEYKVITQERNKKIQETEKKNAMIEM 395

Query: 77  VSLQKSG 83
              + +G
Sbjct: 396 TEQKIAG 402


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 364  KEVICTELNTPTAVALTADRIIILDSGNRRVKVYNKNDKGKILEFGSTGQRKGQFRQPEV 423
            KE    +L  PT+V + A R  I  +   +V +Y+K  +G +  F S G    QF     
Sbjct: 1023 KEFFKLQLKPPTSVQIKALRQFIASAYIDQVALYDKEKRGYVTLFPS-GSEVVQFVPDRT 1081

Query: 424  LAVDP--MGYILVGDSGNCRV 442
              +D   + Y+ + +S + RV
Sbjct: 1082 YNIDSEYVVYLSLHESRSGRV 1102


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 17/88 (19%), Positives = 39/88 (44%)

Query: 18  MRTQIGSILKQLDSATNRLNHKIEHFKDRCERITEQINKTAEDKINAIIDSKNNMLIEAV 77
           MRT+ GS+ K  +  + ++N ++ +        TEQ    A + I  +   K  + I+  
Sbjct: 92  MRTETGSMAKAHEEVSQQINTELRNKIREYIDQTEQQKVVAANAIEELYQKKTALEIDLS 151

Query: 78  SLQKSGDMSALALKTSLEEAKTVASKAM 105
             + + + S   L + + + K +  + +
Sbjct: 152 EKKDAYEYSCNKLNSYMRQTKKMTGREL 179


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 41/191 (21%), Positives = 86/191 (45%), Gaps = 20/191 (10%)

Query: 11  WSQHLDDMRTQIGSILKQLDSATNRLNHKIEHFKDRCE---RITEQINKTAEDKINAIID 67
           W     ++++ I S++ QL+S  N     I   K++ E   ++ E   K  E  ++ +  
Sbjct: 648 WKSEESELKSSIESLISQLESIRNS-QIDIAFSKNQLELKLQLYETKLKEYEQHLSCVNI 706

Query: 68  SKNNMLIEAVSLQKSGDMSALALKTSLEEAKTVASKAMTVSDGVNIDGEQQVTTFMNLHQ 127
           SK  +   + +   +  M +  + ++ E       + +  S+   +  E +     NLH 
Sbjct: 707 SKKQVSSSSDTSFGNTKMDSSMILSNSEAVSDEQERELIESEKHRMKLESE-----NLH- 760

Query: 128 NAIQLLTDVIKWDTEGF--VFDKENFTLEVDSTTPVDA-ESEDPV-----SEGSKHNDPL 179
             +Q   +++K D E    V++ + F LE   ++  +A E  +PV     ++ SK ++  
Sbjct: 761 --LQANIELLKKDLEAINVVYEAKIFDLEKRLSSEANAPELHNPVNLNYDAQLSKISEIK 818

Query: 180 ESEESLVTYYR 190
           E+ + L+T YR
Sbjct: 819 ENYDELLTRYR 829


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 16  DDMRTQ--IGSILKQLDSATNRLNHKIEHFKDRCERITEQINKTAEDKI-----NAIIDS 68
           D+M+ Q  + S+  QLD  TN+ +   E  K R   + +Q ++   + I     +  +++
Sbjct: 392 DNMKLQQKVSSLKLQLDRLTNKFSSFCEQVKQRIPVVKQQRSEIVRNNIYMNFLSESLET 451

Query: 69  KNNMLIEAVSLQKSGDMSALALKTSLEEAKTVAS 102
            NN L +  +   S  M   A    L  ++T  S
Sbjct: 452 SNNNLTKVQAELLSTKMRQEACYLQLTASRTQCS 485


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 147 DKENFTLEVDSTTPVDAESEDPVSEGSKHND 177
           D++N T E +     +   E P  EGS H+D
Sbjct: 361 DEDNNTDEANEDAQSNVSDESPKGEGSSHSD 391


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 126 HQNAIQLLTDVIKWDTEGFVFD----KENFTLEVDSTTPVDAESEDPVSEGSKHNDPLES 181
           + N ++LL DV+K    G   +    KE++  E    TP  +E ++ +SE  +++D   S
Sbjct: 910 NNNGLRLLKDVLKKTYRGARENRSSVKEDYVSESTERTPDASEIDEHISEHEENDDESSS 969


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,658
Number of Sequences: 5004
Number of extensions: 98502
Number of successful extensions: 313
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 16
length of query: 492
length of database: 2,362,478
effective HSP length: 76
effective length of query: 416
effective length of database: 1,982,174
effective search space: 824584384
effective search space used: 824584384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)

- SilkBase 1999-2023 -