Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001917-TA|BGIBMGA001917-PA|IPR013017|NHL,
IPR011044|Quinoprotein amine dehydrogenase, beta chain-like,
IPR001258|NHL repeat
(492 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 36 0.010
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 32 0.21
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 31 0.28
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 29 1.5
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb... 29 1.9
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 29 1.9
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 28 2.6
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 28 3.4
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 27 4.5
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 27 4.5
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 5.9
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 27 7.8
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 7.8
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 27 7.8
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 7.8
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 36.3 bits (80), Expect = 0.010
Identities = 42/192 (21%), Positives = 94/192 (48%), Gaps = 22/192 (11%)
Query: 7 CGVCWSQHLDDMRTQIGSILKQL--DSATNRLNHKIEHFKDRCERITEQINKTAEDKINA 64
C + Q +++ + + S ++ +S+ N++ K+E FK+ + + ++I + +
Sbjct: 64 CVEYFRQRKEELESHVDSEIETSKDESSVNKVEEKVEEFKE--DNVEQEIKQK-----RS 116
Query: 65 IIDSKNNMLIEAVSLQKSGDMSALALKTSLEEAKTVASKAMTVSDGVNIDGEQQVTTFMN 124
+ +S ++E VS +K A + S E +T+ ++ + + G+ + TT +
Sbjct: 117 LSESPQESMLEKVS-KKPKVSEAHNEEISPENVETIENEL-----DLPVKGKDEQTTGL- 169
Query: 125 LHQNAIQLLT-DVIKWDT-EGFVFDKENFTLEVDSTTPVDAES---EDPVSEGSKHNDPL 179
+++NA LLT ++ + + F ++++ L VDS D S P ++ HN P
Sbjct: 170 VYKNANDLLTGSLLSFIVDDSFSYEQKKKLLCVDSFPTSDVRSLVAGTPATDDFSHNKP- 228
Query: 180 ESEESLVTYYRS 191
++ S+ T+Y S
Sbjct: 229 NNQISISTFYSS 240
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 31.9 bits (69), Expect = 0.21
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 28 QLDSATNRLNHKIEHFKDRCERITEQINKTAEDKINAIIDSKNN 71
Q+DSA +L +I HFK++ + +T+Q + A+ +I +++K N
Sbjct: 394 QVDSAVEQLKSRIAHFKEQQDSVTKQRIEKAKQEIEK-LEAKYN 436
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 31.5 bits (68), Expect = 0.28
Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 12 SQHLDDMRTQIGSILKQLDSATNRLNHKIEHFKDRCERITEQ-INKTAEDKINAIIDSKN 70
S+ +D++ I L++L+ N L + H KD R E I D+IN+++D+
Sbjct: 186 SEKIDELLQYIEERLRELEEEKNDL--AVYHKKDNERRCLEYAIYSREHDEINSVLDALE 243
Query: 71 NMLIEAVSLQKSGDMSALALKTSLEEAKTVASKAMTVSDGVNIDGEQQVTTFMNLHQNAI 130
I A+ + + + +E K ++ + + ++ +Q + N+ ++ +
Sbjct: 244 QDRIAALERNDDDSGAFIQREERIERIKAEITELNHSLELLRVEKQQNDEDYTNIMKSKV 303
Query: 131 QL 132
L
Sbjct: 304 AL 305
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 29.1 bits (62), Expect = 1.5
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 59 EDKINAI-IDSKNNMLIEAVSLQKSGDMSALALKTSLEEAKTVASKAMTVSDGVNIDGEQ 117
ED IN+ + SKNN +EAV+ + S + LE + + K +T D V++
Sbjct: 750 EDDINSPKLQSKNNQTVEAVNTETSDKLQEKEANHELENIEKIEEK-LTEVDKVSLSDAF 808
Query: 118 QVTTFMNLHQNAIQLLTDVIKWDTEGFVFDKENFTLEVDSTTPVDAESEDPVSEGS 173
N + ++Q T + +T +KE ++D+ + D E+ E S
Sbjct: 809 PDQEIKN-SRTSVQNGTRSVSKNTP----EKETKVDKIDNVSKKDVETSPGSCETS 859
>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 376
Score = 28.7 bits (61), Expect = 1.9
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 436 DSGNCRVQVFKPTGQLVRVFGGFGTQPGKFGWISGIHVTKHLDIIICDTKNHTVNF 491
D+ V V K TG+ +F GTQ + S +H H IICD + H N+
Sbjct: 62 DTRKLEVYVAKLTGKEAALFVTSGTQGNQLCIRSHLHQPPH--SIICDDRAHIYNW 115
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 85 MSALALKTSLEEAKTVASKAMTVS----DGVNIDGEQQVTTFMNLHQNAIQLLTDVIK-- 138
++ + ++ LE K + + ++ DG+N G+Q+ T+F+++ + L ++
Sbjct: 1282 LNVILTESELEVNKVIEEFQLVINQPGPDGLNSVGQQRYTSFVDVFFKIVDYLNKWLRMR 1341
Query: 139 ----WDTEGFVFDKENFTLEVDSTT 159
WD + KEN + V+ T
Sbjct: 1342 KKRNWDRRSAIARKENRYMSVEDAT 1366
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 196 PHYVWRKTSRPSGVGLSPWDSHLYVCGMDSH 226
P YVW++ + + PW L G SH
Sbjct: 357 PLYVWQQNAAVKALSFCPWQRSLLATGAGSH 387
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 27.9 bits (59), Expect = 3.4
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 297 SPEGIATDNANNLIYVADTGNDRVQIILKPKSGIILLQIIQPDGK-FVDQIGVYNKLKPT 355
+P G+ T NNL ++ R Q K G+ + + PD + F D IG NK+ P
Sbjct: 26 APHGMNT-RGNNLSSMSKNTGQRKQRS-KSIHGLPVAPVFYPDKEEFQDSIGYINKIAPI 83
Query: 356 G 356
G
Sbjct: 84 G 84
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 27.5 bits (58), Expect = 4.5
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 25 ILKQLDSATNRLNH-------KIEHFKDRCERITEQINKTAEDKINAIIDS-KNNMLIEA 76
+LKQL +A +L H K+E K R + I E+ +++ I ++ K N +IE
Sbjct: 336 LLKQLSNAQEKLEHEQHSRNQKLEAAKQRMDNIREEYKVITQERNKKIQETEKKNAMIEM 395
Query: 77 VSLQKSG 83
+ +G
Sbjct: 396 TEQKIAG 402
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1183
Score = 27.5 bits (58), Expect = 4.5
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 364 KEVICTELNTPTAVALTADRIIILDSGNRRVKVYNKNDKGKILEFGSTGQRKGQFRQPEV 423
KE +L PT+V + A R I + +V +Y+K +G + F S G QF
Sbjct: 1023 KEFFKLQLKPPTSVQIKALRQFIASAYIDQVALYDKEKRGYVTLFPS-GSEVVQFVPDRT 1081
Query: 424 LAVDP--MGYILVGDSGNCRV 442
+D + Y+ + +S + RV
Sbjct: 1082 YNIDSEYVVYLSLHESRSGRV 1102
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/88 (19%), Positives = 39/88 (44%)
Query: 18 MRTQIGSILKQLDSATNRLNHKIEHFKDRCERITEQINKTAEDKINAIIDSKNNMLIEAV 77
MRT+ GS+ K + + ++N ++ + TEQ A + I + K + I+
Sbjct: 92 MRTETGSMAKAHEEVSQQINTELRNKIREYIDQTEQQKVVAANAIEELYQKKTALEIDLS 151
Query: 78 SLQKSGDMSALALKTSLEEAKTVASKAM 105
+ + + S L + + + K + + +
Sbjct: 152 EKKDAYEYSCNKLNSYMRQTKKMTGREL 179
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 26.6 bits (56), Expect = 7.8
Identities = 41/191 (21%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 11 WSQHLDDMRTQIGSILKQLDSATNRLNHKIEHFKDRCE---RITEQINKTAEDKINAIID 67
W ++++ I S++ QL+S N I K++ E ++ E K E ++ +
Sbjct: 648 WKSEESELKSSIESLISQLESIRNS-QIDIAFSKNQLELKLQLYETKLKEYEQHLSCVNI 706
Query: 68 SKNNMLIEAVSLQKSGDMSALALKTSLEEAKTVASKAMTVSDGVNIDGEQQVTTFMNLHQ 127
SK + + + + M + + ++ E + + S+ + E + NLH
Sbjct: 707 SKKQVSSSSDTSFGNTKMDSSMILSNSEAVSDEQERELIESEKHRMKLESE-----NLH- 760
Query: 128 NAIQLLTDVIKWDTEGF--VFDKENFTLEVDSTTPVDA-ESEDPV-----SEGSKHNDPL 179
+Q +++K D E V++ + F LE ++ +A E +PV ++ SK ++
Sbjct: 761 --LQANIELLKKDLEAINVVYEAKIFDLEKRLSSEANAPELHNPVNLNYDAQLSKISEIK 818
Query: 180 ESEESLVTYYR 190
E+ + L+T YR
Sbjct: 819 ENYDELLTRYR 829
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 7.8
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 16 DDMRTQ--IGSILKQLDSATNRLNHKIEHFKDRCERITEQINKTAEDKI-----NAIIDS 68
D+M+ Q + S+ QLD TN+ + E K R + +Q ++ + I + +++
Sbjct: 392 DNMKLQQKVSSLKLQLDRLTNKFSSFCEQVKQRIPVVKQQRSEIVRNNIYMNFLSESLET 451
Query: 69 KNNMLIEAVSLQKSGDMSALALKTSLEEAKTVAS 102
NN L + + S M A L ++T S
Sbjct: 452 SNNNLTKVQAELLSTKMRQEACYLQLTASRTQCS 485
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 147 DKENFTLEVDSTTPVDAESEDPVSEGSKHND 177
D++N T E + + E P EGS H+D
Sbjct: 361 DEDNNTDEANEDAQSNVSDESPKGEGSSHSD 391
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 126 HQNAIQLLTDVIKWDTEGFVFD----KENFTLEVDSTTPVDAESEDPVSEGSKHNDPLES 181
+ N ++LL DV+K G + KE++ E TP +E ++ +SE +++D S
Sbjct: 910 NNNGLRLLKDVLKKTYRGARENRSSVKEDYVSESTERTPDASEIDEHISEHEENDDESSS 969
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,658
Number of Sequences: 5004
Number of extensions: 98502
Number of successful extensions: 313
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 16
length of query: 492
length of database: 2,362,478
effective HSP length: 76
effective length of query: 416
effective length of database: 1,982,174
effective search space: 824584384
effective search space used: 824584384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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