GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001917-TA|BGIBMGA001917-PA|IPR013017|NHL,
IPR011044|Quinoprotein amine dehydrogenase, beta chain-like,
IPR001258|NHL repeat
         (492 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    28   0.65 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    27   1.5  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 27.9 bits (59), Expect = 0.65
 Identities = 15/71 (21%), Positives = 32/71 (45%)

Query: 28  QLDSATNRLNHKIEHFKDRCERITEQINKTAEDKINAIIDSKNNMLIEAVSLQKSGDMSA 87
           QL    + LN+++ + K R  + + Q  K   +++N  I++    ++EA   Q       
Sbjct: 712 QLKEQHDMLNYELNNLKQRLAQTSFQQTKEEIEELNKKIETLQKTIVEARETQTQCSAKV 771

Query: 88  LALKTSLEEAK 98
             L+  + + K
Sbjct: 772 KDLQAKIADGK 782


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 39  KIEHFKDRCERITEQINKTAEDKINAIIDSKNNMLIEAVSLQKSGDMSALALKTSLEEAK 98
           K +  +   +R TEQIN+    K+  ++ +K N L + +  + S ++S L ++    E  
Sbjct: 872 KADAMQKNVDRYTEQINEITNSKVK-VLQTKINGLGKQID-KLSANISKLTVEIKTSERN 929

Query: 99  TVASK 103
              SK
Sbjct: 930 VQKSK 934


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 503,338
Number of Sequences: 2123
Number of extensions: 21386
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 3
length of query: 492
length of database: 516,269
effective HSP length: 67
effective length of query: 425
effective length of database: 374,028
effective search space: 158961900
effective search space used: 158961900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)