GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001917-TA|BGIBMGA001917-PA|IPR013017|NHL,
IPR011044|Quinoprotein amine dehydrogenase, beta chain-like,
IPR001258|NHL repeat
         (492 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   3.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   5.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   5.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   5.8  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 208 GVGLSPWDSHLYVCGMDSHSVMVVERAQ 235
           G+ LSP   +LY   + SH++  V   Q
Sbjct: 253 GMALSPLTQNLYYSALSSHNLNYVNTEQ 280


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 208 GVGLSPWDSHLYVCGMDSHSVMVVERAQ 235
           G+ LSP  ++LY   + SH +  V+  Q
Sbjct: 258 GIALSPVTNNLYYSPLLSHGLYYVDTEQ 285


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 208 GVGLSPWDSHLYVCGMDSHSVMVV 231
           G+ LSP  ++LY   + SHS+  V
Sbjct: 256 GMALSPVTNNLYYSPLTSHSLYYV 279


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 378  ALTADRIIILDSGNRRVKVYNKNDKGKILEFGSTGQRKGQFRQPEVL 424
            A  A + I+L SGN+ V V   N    +L      Q++ Q +QP +L
Sbjct: 1198 AQLAGKPIVLASGNKNVGVGVSNSGSVVLGKQQPSQQQTQ-QQPIIL 1243


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,652
Number of Sequences: 429
Number of extensions: 6063
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 4
length of query: 492
length of database: 140,377
effective HSP length: 60
effective length of query: 432
effective length of database: 114,637
effective search space: 49523184
effective search space used: 49523184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)