Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001917-TA|BGIBMGA001917-PA|IPR013017|NHL,
IPR011044|Quinoprotein amine dehydrogenase, beta chain-like,
IPR001258|NHL repeat
(492 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31870.1 68417.m04528 glutathione peroxidase, putative glutat... 36 0.061
At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase fa... 35 0.11
At1g68910.1 68414.m07886 expressed protein similar to Myosin hea... 34 0.25
At2g25080.1 68415.m03001 phospholipid hydroperoxide glutathione ... 32 0.75
At5g26710.1 68418.m03168 glutamate-tRNA ligase, putative / gluta... 32 0.99
At1g47900.1 68414.m05334 expressed protein 32 0.99
At2g30870.1 68415.m03762 glutathione S-transferase, putative sup... 31 1.7
At4g11600.1 68417.m01858 glutathione peroxidase, putative 30 4.0
At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains P... 30 4.0
At3g13360.1 68416.m01681 expressed protein 29 5.3
At5g53020.1 68418.m06585 expressed protein 29 7.0
At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit... 29 7.0
At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit... 29 7.0
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (... 29 7.0
At1g23890.2 68414.m03013 NHL repeat-containing protein contains ... 29 7.0
At1g23890.1 68414.m03014 NHL repeat-containing protein contains ... 29 7.0
At1g72110.1 68414.m08335 expressed protein 29 9.3
At1g14770.2 68414.m01766 expressed protein 29 9.3
At1g14770.1 68414.m01765 expressed protein 29 9.3
>At4g31870.1 68417.m04528 glutathione peroxidase, putative
glutathione peroxidase, Arabidopsis thaliana,
PIR2:S71250
Length = 233
Score = 35.9 bits (79), Expect = 0.061
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 107 VSDGVNIDGEQQVTTFMNLHQNAIQLLTDVIKWDTEGFVFDKENFTLE--VDSTTPVDAE 164
+ D V+++G + L NA L D+IKW+ E F+ DK+ +E +T+P E
Sbjct: 165 IFDKVDVNGPSTAPIYKFLKSNAGGFLGDIIKWNFEKFLVDKKGKVVERYPPTTSPFQIE 224
Query: 165 SE 166
+
Sbjct: 225 KD 226
>At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase
family protein low similarity to SP|P95649 CbbY protein
{Rhodobacter sphaeroides}; contains InterPro accession
IPR005834: Haloacid dehalogenase-like hydrolase
Length = 1055
Score = 35.1 bits (77), Expect = 0.11
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 241 RLTCDEMLCPVQIAFMKSQGEIYVTDKWKHCIHVFSKDGLYLRSIGHKGSRV-------- 292
RL + P ++A ++++D + I V +G ++ IG G
Sbjct: 560 RLATSPLKFPGKLAIDTLNNRLFISDSNHNRIIVTDLEGNFIVQIGSSGEEGFQDGSFED 619
Query: 293 GMFRSPEGIATDNANNLIYVADTGNDRVQII 323
F P+G+A + NL+YVADT N ++ I
Sbjct: 620 AAFNRPQGLAYNAKKNLLYVADTENHALREI 650
Score = 30.3 bits (65), Expect = 3.0
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 258 SQGEIYVTDKWKHCIHVF---SKDGLYLRSIGHKGSRVGMFR-----SPEGIATDNANNL 309
+ G+IY+TD + H I +K + L G G + G + P G+A N
Sbjct: 812 NDGQIYLTDSYNHKIKKLDPVTKRVVTLAGTGKAGFKDGKVKGAQLSEPAGLAI-TENGR 870
Query: 310 IYVADTGNDRVQII 323
++VADT N ++ I
Sbjct: 871 LFVADTNNSLIRYI 884
>At1g68910.1 68414.m07886 expressed protein similar to Myosin heavy
chain, nonmuscle type B (Cellular myosin heavy chain,
type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B)
(Swiss-Prot:Q27991) [Bos taurus]; contains 1
transmembrane domain
Length = 627
Score = 33.9 bits (74), Expect = 0.25
Identities = 23/89 (25%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 26 LKQLDSATNRLNHKIEHFKDRCERITEQINKTAEDKINAIIDSKNNMLIEAVSLQKSGDM 85
+K+LD+A L ++ KD ++ T+++N + E ++ + N + + + Q+ +M
Sbjct: 373 IKELDAANLELTEELNFLKDADDKKTKKVN-SLEKQVRELEVQVQNSKVSSEANQEQQNM 431
Query: 86 --SAL-ALKTSLEEAKTVASKAMTVSDGV 111
SA+ ++T +E+ K+ ASKA + ++ V
Sbjct: 432 LYSAIWDMETLIEDLKSKASKAESRTETV 460
>At2g25080.1 68415.m03001 phospholipid hydroperoxide glutathione
peroxidase, chloroplast / PHGPx (GPX1) identical to
SP|P52032 Phospholipid hydroperoxide glutathione
peroxidase, chloroplast precursor (EC 1.11.1.9) (PHGPx)
{Arabidopsis thaliana}; contains Glutathione peroxidases
signatures, Glutathione_Peroxid_1 [GKVMLIVNVASRCGLT],
Glutathione_Peroxid_2 [LAFPCNQF]; contains EST
GB:T43669, N38679, R30227, H37043, AA042773; identical
to cDNA chloroplast mRNA for glutathione peroxidase
GI:2274856
Length = 236
Score = 32.3 bits (70), Expect = 0.75
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 107 VSDGVNIDGEQQVTTFMNLHQNAIQLLTDVIKWDTEGFVFDKENFTLE--VDSTTPVDAE 164
+ D V+++G + L NA L +IKW+ E F+ DK+ +E +T+P E
Sbjct: 168 IFDKVDVNGPSTAPIYEFLKSNAGGFLGGLIKWNFEKFLIDKKGKVVERYPPTTSPFQIE 227
Query: 165 SE 166
+
Sbjct: 228 KD 229
>At5g26710.1 68418.m03168 glutamate-tRNA ligase, putative /
glutamyl-tRNA synthetase, putatuve / GluRS, putative
identical to gi:3435196
Length = 719
Score = 31.9 bits (69), Expect = 0.99
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 338 PDGKFVDQIGVYNKLKPTGNTTLWETKEVICTELNTPTAVALTADRIIILDSGNRRVKVY 397
PD FV I + K + G TK + E + +A+++ + + ++D GN VK
Sbjct: 540 PDEPFVRMIPKHKKFEGAGEKATTFTKSIWLEEADA-SAISV-GEEVTLMDWGNAIVKEI 597
Query: 398 NKNDKGKI 405
K+++G++
Sbjct: 598 TKDEEGRV 605
>At1g47900.1 68414.m05334 expressed protein
Length = 1054
Score = 31.9 bits (69), Expect = 0.99
Identities = 22/110 (20%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 11 WSQHLDDMRTQIGSILKQLDSATNRLNH---KIEHFKDRCERITEQINKTAEDKIN--AI 65
+ ++ Q+ +Q+D+ +++ +++ + E + E+++ E+ + A+
Sbjct: 76 YENQVESYEEQVKDFEEQIDAYDEKVHEYEEQVQKLNEDVEDLNEKLSVANEEIVTKEAL 135
Query: 66 IDSKNNMLIEAVSLQKSGDMSALALKTSLEEAKTVASKAMTVSDGVNIDG 115
+ + + +AVS + D ALALK +LE SK ++DG
Sbjct: 136 VKQHSKVAEDAVSGWEKADAEALALKNTLE--SVTLSKLTAEDRAAHLDG 183
>At2g30870.1 68415.m03762 glutathione S-transferase, putative
supported by cDNA GI:443698 GB:D17673
Length = 215
Score = 31.1 bits (67), Expect = 1.7
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 401 DKGKILEFGSTGQRKGQFRQPEVLAVDPMGYILVGDSGNCRV 442
+KG E + KG+ RQPE LA+ P G I V G+ ++
Sbjct: 22 EKGVSFETVNVDLMKGEQRQPEYLAIQPFGKIPVLVDGDYKI 63
>At4g11600.1 68417.m01858 glutathione peroxidase, putative
Length = 232
Score = 29.9 bits (64), Expect = 4.0
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 107 VSDGVNIDGEQQVTTFMNLHQNAIQLLTDVIKWDTEGFVFDKENFTLE--VDSTTPVDAE 164
+ D V+++G++ + L + L D IKW+ F+ DK+ ++ +T+P+ E
Sbjct: 162 IFDKVDVNGDKAAPVYKFLKSSKGGLFGDGIKWNFAKFLVDKDGNVVDRFAPTTSPLSIE 221
Query: 165 SE 166
+
Sbjct: 222 KD 223
>At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains Pfam
profile PF01189: NOL1/NOP2/sun family
Length = 599
Score = 29.9 bits (64), Expect = 4.0
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 277 KDGLYLRSIGHKGSRVGMFRSPEGIATDNANNLIYVADTGND-RVQIILKPKSGIILLQI 335
+ GLY+ SR GMFR P GIA D + + + N +I L+ II+
Sbjct: 232 RSGLYIGMGTAMLSRAGMFRVPNGIAVDLNHRVFRLPSLHNILEGEIFLQNLPSIIVAHA 291
Query: 336 IQP 338
+ P
Sbjct: 292 LDP 294
>At3g13360.1 68416.m01681 expressed protein
Length = 459
Score = 29.5 bits (63), Expect = 5.3
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 16 DDMRTQIGSILKQLDSATNRLNHKIEHFKDRCE----RITEQINKTAEDKINAIIDSKNN 71
+D T GS L L HK+E + E RI E N E ++ I K
Sbjct: 323 EDNSTSSGSKALILKEKVKLLEHKLEEARAALEAKEARIQELENSKIESELECIFQRKIE 382
Query: 72 MLIEAVSLQKSGDMSALALKTSLEEAKTVAS-KAMTVSDGVNIDGEQQVTTFMNLHQNAI 130
IE + L +S +S+L + L+E K + S K VS+ NI G+ F L Q +
Sbjct: 383 TEIEHLMLTRS--LSSLQV---LQETKKLHSLKEDPVSNRGNILGKTCKLGFYILTQ--L 435
Query: 131 QLLTDVIKW 139
LL ++++
Sbjct: 436 ILLVSILRF 444
>At5g53020.1 68418.m06585 expressed protein
Length = 721
Score = 29.1 bits (62), Expect = 7.0
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 9/79 (11%)
Query: 21 QIGSILKQLDSATNRLNHKIEHFKDRCERITEQINKTAEDKINAIIDSKNNMLIEAVSLQ 80
++ S +QL++ +R N +IE E ++ +INK +D ++ K+ +L AV ++
Sbjct: 170 ELASSQRQLEAELSRANKQIEAKGHELEDLSLEINKMRKD-----LEQKDRIL--AVMMK 222
Query: 81 KSG-DMSALALKTSLEEAK 98
KS DM+ + T L+EAK
Sbjct: 223 KSKLDMTEKQM-TLLKEAK 240
>At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 29.1 bits (62), Expect = 7.0
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 41 EHFKDRCERITEQINKTAE-DKINAIIDSKNNMLIEAVSLQKSGDMSALALK 91
+HF+D E I E++NK E + +N + ++M+ L K D +A AL+
Sbjct: 76 DHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQ 127
>At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 29.1 bits (62), Expect = 7.0
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 41 EHFKDRCERITEQINKTAE-DKINAIIDSKNNMLIEAVSLQKSGDMSALALK 91
+HF+D E I E++NK E + +N + ++M+ L K D +A AL+
Sbjct: 76 DHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQ 127
>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein
(Atm) identical to ataxia-telangiectasia mutated protein
(Atm) [Arabidopsis thaliana] GI:7529272; contains Pfam
profile PF00855: PWWP domain; contains GA donor splice
site at exon 73
Length = 3255
Score = 29.1 bits (62), Expect = 7.0
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 69 KNNMLIEAVSLQKSGDMSALALKTSLEEAKTVASKAMTVSDGVN-----IDGEQQVTTFM 123
+ N+L+ L+KSGD + K L+ T + DGV ++GE+ +T
Sbjct: 801 RQNLLMMTAMLEKSGDSLSRETKAKLKSEIT----GLLEKDGVKLLNTWLEGERSITFCR 856
Query: 124 NLHQNAIQLLTDVI 137
L QN +L D I
Sbjct: 857 FLSQNTAKLKLDEI 870
>At1g23890.2 68414.m03013 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 400
Score = 29.1 bits (62), Expect = 7.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 417 QFRQPEVLAVDPMGYILVGDSGNCRVQVFKPTGQLVRVFGG 457
+F +P AVD G + V D N ++ +G + + GG
Sbjct: 99 RFSKPRGFAVDAKGNVYVADKSNKAIRKISSSGSVTTIAGG 139
>At1g23890.1 68414.m03014 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 261
Score = 29.1 bits (62), Expect = 7.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 417 QFRQPEVLAVDPMGYILVGDSGNCRVQVFKPTGQLVRVFGG 457
+F +P AVD G + V D N ++ +G + + GG
Sbjct: 99 RFSKPRGFAVDAKGNVYVADKSNKAIRKISSSGSVTTIAGG 139
>At1g72110.1 68414.m08335 expressed protein
Length = 479
Score = 28.7 bits (61), Expect = 9.3
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 50 ITEQINKTAEDKINAIIDSKNNMLIEAVSLQKS-GDMSALALKTSLEEAKTVASKAMTVS 108
I I+ E+ + D +NM + + + K + L LKTS EA TVA ++
Sbjct: 88 IVPDIDPNIENPDEFLEDYTSNMALSPMDMSKPLWEFHLLKLKTSHAEAVTVARFHHSLG 147
Query: 109 DGVNI 113
DG+++
Sbjct: 148 DGMSL 152
>At1g14770.2 68414.m01766 expressed protein
Length = 429
Score = 28.7 bits (61), Expect = 9.3
Identities = 15/70 (21%), Positives = 33/70 (47%)
Query: 3 KSKFCGVCWSQHLDDMRTQIGSILKQLDSATNRLNHKIEHFKDRCERITEQINKTAEDKI 62
+S +C + +D+ + IG+ + D + ++ E ++ I ++N+ +DK+
Sbjct: 178 RSVHMDLCEEEPVDEQQLHIGNAKEPTDEQHVHIGNEKESIDEQQVHIGLELNRNEKDKV 237
Query: 63 NAIIDSKNNM 72
AI D M
Sbjct: 238 IAIDDEDEPM 247
>At1g14770.1 68414.m01765 expressed protein
Length = 429
Score = 28.7 bits (61), Expect = 9.3
Identities = 15/70 (21%), Positives = 33/70 (47%)
Query: 3 KSKFCGVCWSQHLDDMRTQIGSILKQLDSATNRLNHKIEHFKDRCERITEQINKTAEDKI 62
+S +C + +D+ + IG+ + D + ++ E ++ I ++N+ +DK+
Sbjct: 178 RSVHMDLCEEEPVDEQQLHIGNAKEPTDEQHVHIGNEKESIDEQQVHIGLELNRNEKDKV 237
Query: 63 NAIIDSKNNM 72
AI D M
Sbjct: 238 IAIDDEDEPM 247
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,888,550
Number of Sequences: 28952
Number of extensions: 520915
Number of successful extensions: 1433
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1419
Number of HSP's gapped (non-prelim): 25
length of query: 492
length of database: 12,070,560
effective HSP length: 84
effective length of query: 408
effective length of database: 9,638,592
effective search space: 3932545536
effective search space used: 3932545536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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